Browse Element(s) Details


Os.43124.1.S1_at

Description gb:AK119423.1
DB_XREF= gi:37989046
TID=Os.43124.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1111E11.21 (B1111E11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H03, full insert sequence.
FL= gb:AK119423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3145011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g382201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g150401/11retrotransposon protein, putative, unclassified
LOC_Os10g127401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g309901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31400Os.55650.1.A1_at1/111+17496129..17498924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31400OsAffx.21756.5.A1_x_at1/111+17496129..17498924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31410NANA1+17500839..17502878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31420NANA1+17508549..17512703retrotransposon protein, putative, unclassified
LOC_Os01g31430NANA1+17513767..17516949hypothetical protein
LOC_Os01g31440NANA1+17519804..17521026retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31450Os.43124.1.S1_at11/111+17521772..17524602retrotransposon protein, putative, unclassified, expressed
LOC_Os01g31450Os.26930.1.S1_x_at4/111+17521772..17524602retrotransposon protein, putative, unclassified, expressed
LOC_Os01g31460NANA1+17526187..17530299hypothetical protein
LOC_Os01g31470Os.9267.1.S1_a_at10/111+17537101..17545156Mov34/MPN/PAD-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43124.1.S1_at--578--1311Chr01:17524176..17524200 (25 bp)
AGATGGGCGCAAGGTGTCACTCGAA
LOC_Os01g31450
Os.43124.1.S1_at--352--5518Chr07:8623203..8623226 (24 bp)
GAACACATGCGCAAGTACGCTACAA
LOC_Os07g15040
Os.43124.1.S1_at--44--4511Chr01:17524287..17524311 (25 bp)
GCCGATGGAACTATTGCCTGGCCAT
LOC_Os01g31450
Os.43124.1.S1_at--641--4171Chr01:17524335..17524359 (25 bp)
CCCAGTGGCGGTCAGAAAGCTCTAA
LOC_Os01g31450
Os.43124.1.S1_at--495--2471Chr01:17524388..17524412 (25 bp)
AACACAGGTCCAGGATGAGCTCTTT
LOC_Os01g31450
Os.43124.1.S1_at--612--10291Chr01:17524411..17524435 (25 bp)
TTTCGCTTGGCAACACTGGAAGGCA
LOC_Os01g31450
Os.43124.1.S1_at--279--751Chr01:17524481..17524505 (25 bp)
ATGTCTAGAAAAGGTGGCACCCTAT
LOC_Os01g31450
Os.43124.1.S1_at--310--8051Chr01:17524496..17524520 (25 bp)
GGCACCCTATTTGCCAACTTGTAAA
LOC_Os01g31450
Os.43124.1.S1_at--892--7011Chr01:17524524..17524548 (25 bp)
GTACATTTGTATAGGCCATTCGGCA
LOC_Os01g31450
Os.43124.1.S1_at--184--10111Chr01:17524535..17524559 (25 bp)
TAGGCCATTCGGCATTTCTCGTTTT
LOC_Os01g31450
Os.43124.1.S1_at--951--171Chr01:17524548..17524572 (25 bp)
ATTTCTCGTTTTGTAAGCCCTTCAG
LOC_Os01g31450
Target Sequence 
AGATGGGCGCAAGGTGTCACTCGAACTCCTGGAAGGGGTAAGAGTCGAGGCACTAGAACACATGCGCAAGTACGCTACAA
GCACCTCGGCAACTTACAACAAGAAAGTTCGGCCGATGGAACTATTGCCTGGCCATCTCGTCCTAAGGAAGAAGGCGAAC
CCAGTGGCGGTCAGAAAGCTCTAATCGAAGTGGGAGGGGCCATACCTCATCAAACACAGGTCCAGGATGAGCTCTTTTCG
CTTGGCAACACTGGAAGGCAAAGAGTTCGACTACTCCTGGAACGCTGCTTCTCTTAAGCGTTTCTATGTCTAGAAAAGGT
GGCACCCTATTTGCCAACTTGTAAAAATGTACATTTGTATAGGCCATTCGGCATTTCTCGTTTTGTAAGCCCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis