Browse Element(s) Details


Os.9267.1.S1_a_at

Description gb:AK102705.1
DB_XREF= gi:32987914
TID=Os.9267.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1111E11.23 (B1111E11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103P11, full insert sequence.
FL= gb:AK102705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3147010/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31420NANA1+17508549..17512703retrotransposon protein, putative, unclassified
LOC_Os01g31430NANA1+17513767..17516949hypothetical protein
LOC_Os01g31440NANA1+17519804..17521026retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31450Os.43124.1.S1_at11/111+17521772..17524602retrotransposon protein, putative, unclassified, expressed
LOC_Os01g31450Os.26930.1.S1_x_at4/111+17521772..17524602retrotransposon protein, putative, unclassified, expressed
LOC_Os01g31460NANA1+17526187..17530299hypothetical protein
LOC_Os01g31470Os.9267.1.S1_a_at10/111+17537101..17545156Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g31480OsAffx.11266.1.S1_at11/111+17550496..17551849hypothetical protein
LOC_Os01g31480OsAffx.9785.1.S1_at5/111+17550496..17551849hypothetical protein
LOC_Os01g31494OsAffx.2125.1.S1_at11/111+17553507..17555544hypothetical protein
LOC_Os01g31494OsAffx.11957.1.S1_x_at4/111+17553507..17555544hypothetical protein
LOC_Os01g31510NANA1+17559586..17563570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31520OsAffx.11267.1.S1_at11/111+17567069..17567337hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9267.1.S1_a_at--190--371NONE
ATAATCACTATTCATACCAGGTCAT
NONE
Os.9267.1.S1_a_at--1101--9971Chr01:17539256..17539276 (21 bp)
TACCAGGTCATGCTTCCTGAAGCAA
LOC_Os01g31470
Os.9267.1.S1_a_at--155--7871Chr01:17537543..17537567 (25 bp)
GGTATATTTCATCTGACGGATCCAG
LOC_Os01g31470
Os.9267.1.S1_a_at--478--10551Chr01:17537536..17537560 (25 bp)
TTCATCTGACGGATCCAGGTGGTAT
LOC_Os01g31470
Os.9267.1.S1_a_at--598--571Chr01:17537524..17537548 (25 bp)
ATCCAGGTGGTATGGGTGTGATACA
LOC_Os01g31470
Os.9267.1.S1_a_at--679--33Chr05:12852991..12853103 (25 bp)
ATTGTCAAGAGAGTGGATTTCATCC
NONE
Os.9267.1.S1_a_at--1130--1091Chr01:17537486..17537510 (25 bp)
AGTGGATTTCATCCTCATGAGGAGC
LOC_Os01g31470
Os.9267.1.S1_a_at--581--971Chr01:17537467..17537491 (25 bp)
AGGAGCCTCTCGACGGTACCTCTAT
LOC_Os01g31470
Os.9267.1.S1_a_at--263--7851Chr01:17537453..17537477 (25 bp)
GGTACCTCTATCTATGAGCATTGCT
LOC_Os01g31470
Os.9267.1.S1_a_at--624--8651Chr01:17537424..17537448 (25 bp)
TGTGTACATGAACCCAAACGTGAAA
LOC_Os01g31470
Os.9267.1.S1_a_at--812--10091Chr01:17537394..17537418 (25 bp)
TATGGTGGATCTCCGTGAACTGTGA
LOC_Os01g31470
Target Sequence 
ATAATCACTATTCATACCAGGTCATGCTTCCTGAAGCAATTGCAATAGTTATGGCACCTACTGATACAACAAGAAAGCAT
GGTATATTTCATCTGACGGATCCAGGTGGTATGGGTGTGATACATGATTGTCAAGAGAGTGGATTTCATCCTCATGAGGA
GCCTCTCGACGGTACCTCTATCTATGAGCATTGCTCCCATGTGTACATGAACCCAAACGTGAAATTTGATATGGTGGATC
TCCGTGAACTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9267.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis