Browse Element(s) Details


OsAffx.11267.1.S1_at

Description tigr:9629.m02932
TID=OsAffx.11267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3152011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31470Os.9267.1.S1_a_at10/111+17537101..17545156Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g31480OsAffx.11266.1.S1_at11/111+17550496..17551849hypothetical protein
LOC_Os01g31480OsAffx.9785.1.S1_at5/111+17550496..17551849hypothetical protein
LOC_Os01g31494OsAffx.2125.1.S1_at11/111+17553507..17555544hypothetical protein
LOC_Os01g31494OsAffx.11957.1.S1_x_at4/111+17553507..17555544hypothetical protein
LOC_Os01g31510NANA1+17559586..17563570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31520OsAffx.11267.1.S1_at11/111+17567069..17567337hypothetical protein
LOC_Os01g31540NANA1+17579628..17580068retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31550NANA1+17583956..17585301retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31560NANA1+17587212..17587608hypothetical protein
LOC_Os01g31570NANA1+17589019..17589339hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11267.1.S1_at--1143--3531Chr01:17567141..17567165 (25 bp)
CATCGACCTCGTCGTTCATGGAGGC
LOC_Os01g31520
OsAffx.11267.1.S1_at--290--531Chr01:17567142..17567166 (25 bp)
ATCGACCTCGTCGTTCATGGAGGCT
LOC_Os01g31520
OsAffx.11267.1.S1_at--524--9371Chr01:17567143..17567167 (25 bp)
TCGACCTCGTCGTTCATGGAGGCTA
LOC_Os01g31520
OsAffx.11267.1.S1_at--711--5831Chr01:17567145..17567169 (25 bp)
GACCTCGTCGTTCATGGAGGCTATG
LOC_Os01g31520
OsAffx.11267.1.S1_at--599--1751Chr01:17567146..17567170 (25 bp)
ACCTCGTCGTTCATGGAGGCTATGC
LOC_Os01g31520
OsAffx.11267.1.S1_at--663--9411Chr01:17567149..17567173 (25 bp)
TCGTCGTTCATGGAGGCTATGCCCA
LOC_Os01g31520
OsAffx.11267.1.S1_at--1101--3991Chr01:17567150..17567174 (25 bp)
CGTCGTTCATGGAGGCTATGCCCAC
LOC_Os01g31520
OsAffx.11267.1.S1_at--693--7211Chr01:17567151..17567175 (25 bp)
GTCGTTCATGGAGGCTATGCCCACC
LOC_Os01g31520
OsAffx.11267.1.S1_at--289--4031Chr01:17567153..17567177 (25 bp)
CGTTCATGGAGGCTATGCCCACCTT
LOC_Os01g31520
OsAffx.11267.1.S1_at--699--10531Chr01:17567155..17567179 (25 bp)
TTCATGGAGGCTATGCCCACCTTCA
LOC_Os01g31520
OsAffx.11267.1.S1_at--865--9611Chr01:17567156..17567180 (25 bp)
TCATGGAGGCTATGCCCACCTTCAC
LOC_Os01g31520
Target Sequence 
CATCGACCTCGTCGTTCATGGAGGCTATGCCCACCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis