Browse Element(s) Details


OsAffx.11266.1.S1_at

Description tigr:9629.m02928
TID=OsAffx.11266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3148011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31460NANA1+17526187..17530299hypothetical protein
LOC_Os01g31470Os.9267.1.S1_a_at10/111+17537101..17545156Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g31480OsAffx.11266.1.S1_at11/111+17550496..17551849hypothetical protein
LOC_Os01g31480OsAffx.9785.1.S1_at5/111+17550496..17551849hypothetical protein
LOC_Os01g31494OsAffx.2125.1.S1_at11/111+17553507..17555544hypothetical protein
LOC_Os01g31494OsAffx.11957.1.S1_x_at4/111+17553507..17555544hypothetical protein
LOC_Os01g31510NANA1+17559586..17563570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31520OsAffx.11267.1.S1_at11/111+17567069..17567337hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11266.1.S1_at--158--1611Chr01:17550546..17550667 (25 bp)
AGCTGCTCAAGGTAGACTCATCCAT
LOC_Os01g31480
OsAffx.11266.1.S1_at--830--391Chr01:17550666..17550690 (25 bp)
ATCAGCCTTTGACTGCGGCGGACAA
LOC_Os01g31480
OsAffx.11266.1.S1_at--154--2231Chr01:17550687..17550711 (25 bp)
ACAATGTGCGTTTCAGGGTCTCAAC
LOC_Os01g31480
OsAffx.11266.1.S1_at--742--5811Chr01:17550719..17550743 (25 bp)
GACCCGAATAAAACCGCTACTTCAG
LOC_Os01g31480
OsAffx.11266.1.S1_at--176--9151Chr01:17550757..17550781 (25 bp)
TGCGTCTGCCCAAATGACATCCGAA
LOC_Os01g31480
OsAffx.11266.1.S1_at--466--5671Chr01:17550772..17550796 (25 bp)
GACATCCGAAGCCACTGTTGGAGCT
LOC_Os01g31480
OsAffx.11266.1.S1_at--216--9231Chr01:17550850..17550874 (25 bp)
TCCAGGATCTTCCTCATTGGATGCT
LOC_Os01g31480
OsAffx.11266.1.S1_at--203--9031Chr01:17550877..17550901 (25 bp)
TGCAAAGTCATCCTCCTCGTTGGGT
LOC_Os01g31480
OsAffx.11266.1.S1_at--1151--7271Chr01:17550900..17550924 (25 bp)
GTGCCGCTACCGATCAGTCGGGTGA
LOC_Os01g31480
OsAffx.11266.1.S1_at--860--5751Chr01:17550926..17550950 (25 bp)
GACGGTGATACAACCGATGCTGCTC
LOC_Os01g31480
OsAffx.11266.1.S1_at--681--5351Chr01:17551750..17551774 (25 bp)
GAAGAGCCTGGCCAAGTCCGACAAG
LOC_Os01g31480
Target Sequence 
AGCTGCTCAAGGTAGACTCATCCATCAGCCTTTGACTGCGGCGGACAATGTGCGTTTCAGGGTCTCAACCCAAGTCGACC
CGAATAAAACCGCTACTTCAGGAGAAGGATCCGGTGCGTCTGCCCAAATGACATCCGAAGCCACTGTTGGAGCTACGGCC
GCTGCCATCGACCAGCTGGGTGAGGGCGGTGACGCTGCAGATGGCGCTCCAGGATCTTCCTCATTGGATGCTGGTGCAAA
GTCATCCTCCTCGTTGGGTGCCGCTACCGATCAGTCGGGTGAGGACGGTGATACAACCGATGCTGCTCTGGGGTCTTCTT
CACCGGTGGAACATGAGCGCAAGAAGAGCCTGGCCAAGTCCGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis