Browse Element(s) Details


OsAffx.9785.1.S1_at

Description gb:NM_189162.1
DB_XREF= gi:34905407
GEN=B1111E11.24
TID=OsAffx.9785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1111E11.24 (B1111E11.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g314805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31460NANA1+17526187..17530299hypothetical protein
LOC_Os01g31470Os.9267.1.S1_a_at10/111+17537101..17545156Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g31480OsAffx.11266.1.S1_at11/111+17550496..17551849hypothetical protein
LOC_Os01g31480OsAffx.9785.1.S1_at5/111+17550496..17551849hypothetical protein
LOC_Os01g31494OsAffx.2125.1.S1_at11/111+17553507..17555544hypothetical protein
LOC_Os01g31494OsAffx.11957.1.S1_x_at4/111+17553507..17555544hypothetical protein
LOC_Os01g31510NANA1+17559586..17563570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31520OsAffx.11267.1.S1_at11/111+17567069..17567337hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9785.1.S1_at--913--131Chr01:17549458..17549482 (25 bp)
ATTACGAGCTTCTTCGAGCCCGGGA
NONE
OsAffx.9785.1.S1_at--847--4531Chr01:17549475..17549499 (25 bp)
GCCCGGGACGGCTATCAGCACGAAA
NONE
OsAffx.9785.1.S1_at--513--2311Chr01:17549497..17549521 (25 bp)
AAAGGGTGCCCAAAGCTGCTGTACT
NONE
OsAffx.9785.1.S1_at--7--2252Chr01:17549792..17549816 (25 bp)
AAATTGTTGAATCTGCCAGCCCCGA
NONE
OsAffx.9785.1.S1_at--1013--8651Chr01:17549845..17549869 (25 bp)
TGTCCGAACACCTGGCAGCGGTATA
NONE
OsAffx.9785.1.S1_at--35--691Chr01:17550484..17550508 (25 bp)
ATGACTGCGGCAATGTCGCGATCGG
NONE
OsAffx.9785.1.S1_at--517--4751Chr01:17550573..17550597 (25 bp)
GCTGACTAGCATCCCCAAGATCGGA
LOC_Os01g31480
OsAffx.9785.1.S1_at--97--1291Chr01:17550590..17550614 (25 bp)
AGATCGGACCTCATCGATTTGCTCG
LOC_Os01g31480
OsAffx.9785.1.S1_at--501--8331Chr01:17551150..17551174 (25 bp)
GGCTGCGGATAAGGACGACGTCACT
LOC_Os01g31480
OsAffx.9785.1.S1_at--374--1251Chr01:17551179..17551503 (25 bp)
AGATTGCTCAAGTCCGAAAAACGTC
LOC_Os01g31480
OsAffx.9785.1.S1_at--103--791Chr01:17551525..17551549 (25 bp)
AGGCCCTAAAGCTCATTTTCCACAA
LOC_Os01g31480
Target Sequence 
ATTACGAGCTTCTTCGAGCCCGGGACGGCTATCAGCACGAAAGGGTGCCCAAAGCTGCTGTACTGCAAGTCGACCCTCCC
AGAACCAAAGACCACCACAGCTGTGCCGGGGAAGGGGAAGCAAATTGTTGAATCTGCCAGCCCCGACTCTAGAGCCCAGA
AGAAGGACATGACCTGTCCGAACACCTGGCAGCGGTATAGATGGCCAAAAGGCCCGAGGCCCGACGGCCCGGCCCACGGC
ACGGCAGCGGTGGCGGCTGAGATGACTGCGGCAATGTCGCGATCGGCGATAGACGGGACAAAGTTGGTGGGATTGCCAGG
TGCAGCTGCTCAAGGTCCGTTCGGTCCGCCGCTGACTAGCATCCCCAAGATCGGACCTCATCGATTTGCTCGGGGAAGGG
CAAAGAGGCTGCGGATAAGGACGACGTCACTGAGGAGATTGCTCAAGTCCGAAAAACGTCAAACGGTCAAGGCGAAGAGC
CAGGCCCTAAAGCTCATTTTCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis