Browse Element(s) Details


OsAffx.2125.1.S1_at

Description tigr:9629.m02929
TID=OsAffx.2125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3149411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31460NANA1+17526187..17530299hypothetical protein
LOC_Os01g31470Os.9267.1.S1_a_at10/111+17537101..17545156Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g31480OsAffx.11266.1.S1_at11/111+17550496..17551849hypothetical protein
LOC_Os01g31480OsAffx.9785.1.S1_at5/111+17550496..17551849hypothetical protein
LOC_Os01g31494OsAffx.2125.1.S1_at11/111+17553507..17555544hypothetical protein
LOC_Os01g31494OsAffx.11957.1.S1_x_at4/111+17553507..17555544hypothetical protein
LOC_Os01g31510NANA1+17559586..17563570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31520OsAffx.11267.1.S1_at11/111+17567069..17567337hypothetical protein
LOC_Os01g31540NANA1+17579628..17580068retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2125.1.S1_at--42--6551Chr01:17553814..17554116 (25 bp)
GATTATCTAGGATAGTCCAGGAGGT
LOC_Os01g31494
OsAffx.2125.1.S1_at--958--991Chr01:17553806..17553841 (25 bp)
AGGATAGTCCAGGAGGTGGTTTCAA
LOC_Os01g31494
OsAffx.2125.1.S1_at--1042--271Chr01:17553803..17553824 (22 bp)
ATAGTCCAGGAGGTGGTTTCAAGAA
LOC_Os01g31494
OsAffx.2125.1.S1_at--792--9211Chr01:17553799..17553823 (25 bp)
TCCAGGAGGTGGTTTCAAGAATACT
LOC_Os01g31494
OsAffx.2125.1.S1_at--14--1031Chr01:17553793..17553817 (25 bp)
AGGTGGTTTCAAGAATACTCCGATG
LOC_Os01g31494
OsAffx.2125.1.S1_at--456--7511Chr01:17553791..17553815 (25 bp)
GTGGTTTCAAGAATACTCCGATGGA
LOC_Os01g31494
OsAffx.2125.1.S1_at--843--7871Chr01:17553789..17553813 (25 bp)
GGTTTCAAGAATACTCCGATGGAGG
LOC_Os01g31494
OsAffx.2125.1.S1_at--701--1451Chr01:17553782..17553806 (25 bp)
AGAATACTCCGATGGAGGGCCTCTT
LOC_Os01g31494
OsAffx.2125.1.S1_at--506--3091Chr01:17553780..17553804 (25 bp)
AATACTCCGATGGAGGGCCTCTTGG
LOC_Os01g31494
OsAffx.2125.1.S1_at--752--9891Chr01:17553778..17553802 (25 bp)
TACTCCGATGGAGGGCCTCTTGGTT
LOC_Os01g31494
OsAffx.2125.1.S1_at--910--4051Chr01:17553773..17553797 (25 bp)
CGATGGAGGGCCTCTTGGTTCCAGT
LOC_Os01g31494
Target Sequence 
GATTATCTAGGATAGTCCAGGAGGTGGTTTCAAGAATACTCCGATGGAGGGCCTCTTGGTTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis