Browse Element(s) Details


OsAffx.20579.1.S1_at

Description gb:NM_195559.1
DB_XREF= gi:37532477
TID=OsAffx.20579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0047B19.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g309401/11pentatricopeptide, putative, expressed
LOC_Os04g286301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30910Os.16261.1.S1_at11/116+17972898..17977690CAAX amino terminal protease family protein, expressed
LOC_Os06g30920Os.50508.1.S1_at4/116+17983456..17983849hypothetical protein
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein
LOC_Os06g30940Os.55063.1.S1_at10/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_x_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30950Os.35365.1.S1_at11/116+18001698..18008342integral membrane protein, putative, expressed
LOC_Os06g30960OsAffx.15689.1.S1_at11/116+18011565..18012696hypothetical protein
LOC_Os06g30970Os.322.1.S1_at11/116+18014523..18016698Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os06g30980OsAffx.31777.1.S1_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.31777.1.S1_x_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.25156.5.S1_x_at1/116+18022967..18025688hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20579.1.S1_at--480--4511Chr10:7816158..7816182 (25 bp)
GCCGCCAGAGGAAATCCAAACGTCA
NONE
OsAffx.20579.1.S1_at--691--1071Chr10:7817311..7817435 (25 bp)
AGGGCGACGGCCTGGGCAGTGATGG
NONE
OsAffx.20579.1.S1_at--1159--5552Chr10:7817479..7817503 (25 bp)
GAAAGGGAGTAATCGCATGGAGAAC
NONE
OsAffx.20579.1.S1_at--942--7051Chr10:7817487..7817708 (25 bp)
GTAATCGCATGGAGAACGGACGAAG
NONE
OsAffx.20579.1.S1_at--477--8551Chr10:7817729..7817753 (25 bp)
TGGAGGTGTCACAGCGGCATTCGTC
NONE
OsAffx.20579.1.S1_at--426--2151Chr10:7817739..7817763 (25 bp)
ACAGCGGCATTCGTCCGTCGGTTGT
NONE
OsAffx.20579.1.S1_at--696--9411Chr10:7817749..7817773 (25 bp)
TCGTCCGTCGGTTGTTCTCGTGCAT
NONE
OsAffx.20579.1.S1_at--424--7912Chr10:7817758..7817782 (25 bp)
GGTTGTTCTCGTGCATGCGCATGCG
NONE
OsAffx.20579.1.S1_at--440--611Chr10:7817778..7817802 (25 bp)
ATGCGGGCGTCTGGCGTGCGCGGGT
NONE
OsAffx.20579.1.S1_at--278--7191Chr10:7817801..7817825 (25 bp)
GTCGGCACGAGCTGGGCGCGAGGCA
NONE
OsAffx.20579.1.S1_at--1099--4991Chr10:7817826..7817850 (25 bp)
GCAGGAGGCGGCACAGACACGGCTG
NONE
Target Sequence 
GCCGCCAGAGGAAATCCAAACGTCAGACATCCGCCGCCTATACCTACCGTTTAGGTGGCACCAGTGAGATCCAGCTAAGG
AACCTGCTGGAATCCCACGACGCCAGCGGTGGAGGCTGGTTTTGGATGGGGAGGCACCGATTTTGCGATCTAGGGGTCGA
GGCGATTCTGTTTTTGTGGTCGGAGGCGAGAGAAGCCCCGGTGGCGTGGCTGCGGCGGGTAGAAACAGGAGGCGGAGGCG
GCCATGGTGGCGGCGACTTCGGCAAACTCCGGGGAAGGGCGACGGCCTGGGCAGTGATGGTGGGAGGCGGCGCCGGCGAC
GGATTGGATGGGGAAACAGAGGGGAAAGGGAGTAATCGCATGGAGAACGGACGAAGGAATTATGGAGGCGGGAAGCTGGA
GGTGTCACAGCGGCATTCGTCCGTCGGTTGTTCTCGTGCATGCGCATGCGGGCGTCTGGCGTGCGCGGGTCGGCACGAGC
TGGGCGCGAGGCAGCAGGAGGCGGCACAGACACGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis