Browse Element(s) Details


OsAffx.15689.1.S1_at

Description tigr:9634.m02984
TID=OsAffx.15689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3096011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein
LOC_Os06g30940Os.55063.1.S1_at10/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_x_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30950Os.35365.1.S1_at11/116+18001698..18008342integral membrane protein, putative, expressed
LOC_Os06g30960OsAffx.15689.1.S1_at11/116+18011565..18012696hypothetical protein
LOC_Os06g30970Os.322.1.S1_at11/116+18014523..18016698Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os06g30980OsAffx.31777.1.S1_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.31777.1.S1_x_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.25156.5.S1_x_at1/116+18022967..18025688hypothetical protein
LOC_Os06g30990OsAffx.435.1.S1_at1/116+18027001..18029743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30990Os.43124.1.S1_at1/116+18027001..18029743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31000Os.47114.1.S1_x_at1/116+18030977..18040297retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15689.1.S1_at--813--851Chr06:18012280..18012304 (25 bp)
ATGGCATCGATCAAGTTCCGCAATG
LOC_Os06g30960
OsAffx.15689.1.S1_at--824--671Chr06:18012302..18012326 (25 bp)
ATGACAAATGCCCACTGATGCCGGC
LOC_Os06g30960
OsAffx.15689.1.S1_at--338--8851Chr06:18012317..18012341 (25 bp)
TGATGCCGGCCAAGATGCCAATCGG
LOC_Os06g30960
OsAffx.15689.1.S1_at--787--691Chr06:18012392..18012416 (25 bp)
ATGAGCTTCAATTCAACCTCTCCAC
LOC_Os06g30960
OsAffx.15689.1.S1_at--658--4531Chr06:18012470..18012494 (25 bp)
GCCCCTGCCTTGGTATGGTTAGCGA
LOC_Os06g30960
OsAffx.15689.1.S1_at--196--831Chr06:18012484..18012508 (25 bp)
ATGGTTAGCGAGGTCTCAGACAGCG
LOC_Os06g30960
OsAffx.15689.1.S1_at--766--9651Chr06:18012499..18012523 (25 bp)
TCAGACAGCGACGACCATGAGCACG
LOC_Os06g30960
OsAffx.15689.1.S1_at--3--3271Chr06:18012531..18012555 (25 bp)
CAACAAGGCATTCTCGTTTAGCAGA
LOC_Os06g30960
OsAffx.15689.1.S1_at--1055--7691Chr06:18012583..18012607 (25 bp)
GGGTCAGCACACTGCTATCCAGGAT
LOC_Os06g30960
OsAffx.15689.1.S1_at--320--10151Chr06:18012598..18012622 (25 bp)
TATCCAGGATGTGGGTCATCACGAG
LOC_Os06g30960
OsAffx.15689.1.S1_at--755--1531Chr06:18012624..18012648 (25 bp)
AGCATGCTCCTATTGTAGGGTCGCC
LOC_Os06g30960
Target Sequence 
ATGGCATCGATCAAGTTCCGCAATGACAAATGCCCACTGATGCCGGCCAAGATGCCAATCGGGGTACTCAGTTTGCTTTT
TCAGTCTATCCTCTCCGCCGGTGGCAACCCCCATGAGCTTCAATTCAACCTCTCCACCTCCTCTAAGCCGCAGCCCGGTG
ACTTCTCATCCTCTGCTCCTTACTACCCCTGCCCCTGCCTTGGTATGGTTAGCGAGGTCTCAGACAGCGACGACCATGAG
CACGAGCTGAACAACAAGGCATTCTCGTTTAGCAGAAAAGGTTCGTGGCAAGGAAGAGCAGCGGGGTCAGCACACTGCTA
TCCAGGATGTGGGTCATCACGAGGAGCATGCTCCTATTGTAGGGTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis