Browse Element(s) Details


Os.50508.1.S1_at

Description gb:AK121505.1
DB_XREF= gi:37991128
TID=Os.50508.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022N03, full insert sequence.
FL= gb:AK121505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g309204/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30894Os.11737.1.A1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30894OsAffx.27894.1.S1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30910Os.16261.1.S1_at11/116+17972898..17977690CAAX amino terminal protease family protein, expressed
LOC_Os06g30920Os.50508.1.S1_at4/116+17983456..17983849hypothetical protein
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein
LOC_Os06g30940Os.55063.1.S1_at10/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_x_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30950Os.35365.1.S1_at11/116+18001698..18008342integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50508.1.S1_at--1102--8891Chr06:17983584..17983608 (25 bp)
TGAGAACTCCCTCGGCAGTTTCAAT
LOC_Os06g30920
Os.50508.1.S1_at--1144--9591Chr06:17983623..17983647 (25 bp)
TCATTTGTGTATGTGGCTGGCGCGT
LOC_Os06g30920
Os.50508.1.S1_at--2--4331Chr06:17983658..17983682 (25 bp)
CCATAATTCGATTCTCGTCCACGAA
LOC_Os06g30920
Os.50508.1.S1_at--337--2271Chr06:17983691..17983715 (25 bp)
AAATCATCTGAGACTCGCGAAACGA
LOC_Os06g30920
Os.50508.1.S1_at--454--2931Chr06:17985630..17985653 (24 bp)
AAGGCACATCAATTGACCAGGGAAT
NONE
Os.50508.1.S1_at--346--10771Chr06:17985641..17985665 (25 bp)
TTGACCAGGGAATTGCATATGTGCT
NONE
Os.50508.1.S1_at--990--1811Chr06:17985710..17985734 (25 bp)
ACGCCTTATCTCCATACAAGCTATT
NONE
Os.50508.1.S1_at--267--10331Chr06:17985734..17985758 (25 bp)
TTTAAGCACCTACAATCCTCTAATC
NONE
Os.50508.1.S1_at--1127--3031Chr06:17985747..17985771 (25 bp)
AATCCTCTAATCCTTGTACCAGTAG
NONE
Os.50508.1.S1_at--307--9231Chr06:17985757..17985781 (25 bp)
TCCTTGTACCAGTAGAGCTAGCTAT
NONE
Os.50508.1.S1_at--482--6991Chr06:17985835..17985859 (25 bp)
GTACGCGTGACATAATGGTTATCAA
NONE
Target Sequence 
TGAGAACTCCCTCGGCAGTTTCAATCCACCCCCTGTTCCTCATTTGTGTATGTGGCTGGCGCGTGGGCCCCACGCCATAA
TTCGATTCTCGTCCACGAAAGAAAAAAAAATCATCTGAGACTCGCGAAACGAAGGCACATCAATTGACCAGGGAATTGCA
TATGTGCTGATGCTGGTGGCCCTTGTGCTCACCTACCTCATCCATCCGCTGGACGCCTTATCTCCATACAAGCTATTTTA
AGCACCTACAATCCTCTAATCCTTGTACCAGTAGAGCTAGCTATGTGAGGATAAACAGAATTTAGGTGAGGTTGAGGAGT
GCTCTGATTTTTTTTTTGTACGCGTGACATAATGGTTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis