Browse Element(s) Details


OsAffx.27894.1.S1_at

Description tigr:9634.m02978
TID=OsAffx.27894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3089411/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30860NANA6+17914926..17916086WRKY DNA binding domain containing protein, expressed
LOC_Os06g30870NANA6+17925660..17926442hypothetical protein
LOC_Os06g30880OsAffx.15688.1.S1_at11/116+17936487..17936844hypothetical protein
LOC_Os06g30894Os.11737.1.A1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30894OsAffx.27894.1.S1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30910Os.16261.1.S1_at11/116+17972898..17977690CAAX amino terminal protease family protein, expressed
LOC_Os06g30920Os.50508.1.S1_at4/116+17983456..17983849hypothetical protein
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27894.1.S1_at--889--1211Chr06:17953060..17953084 (25 bp)
AGTTACACTCTCGTTAGGCTGCATA
LOC_Os06g30894
OsAffx.27894.1.S1_at--103--5051Chr06:17952520..17952544 (25 bp)
GCACTATGTACTCTTGTTACTCCTA
LOC_Os06g30894
OsAffx.27894.1.S1_at--335--9911Chr06:17952455..17952527 (25 bp)
TACTCCTACTTTGTGGTCGCTTCAT
LOC_Os06g30894
OsAffx.27894.1.S1_at--718--2691Chr06:17952411..17952435 (25 bp)
AAGCTGCTGGGTTGTCTTATGTCTC
LOC_Os06g30894
OsAffx.27894.1.S1_at--654--7631Chr06:17951323..17951347 (25 bp)
GGGACGCTTTTCCTTGCTATGGAAA
LOC_Os06g30894
OsAffx.27894.1.S1_at--123--9751Chr06:17951224..17951247 (24 bp)
TAATTGGTCCTGAACTTGCTCCTGA
LOC_Os06g30894
OsAffx.27894.1.S1_at--836--6691Chr06:17950791..17950815 (25 bp)
GTTCCTCAAGTGAAACGGCTACGCT
LOC_Os06g30894
OsAffx.27894.1.S1_at--1037--10271Chr06:17950624..17950648 (25 bp)
TTTGCTCAGCAGCTTGTTCTTTTTG
LOC_Os06g30894
OsAffx.27894.1.S1_at--394--10671Chr06:17950587..17950611 (25 bp)
TTCCTGTGCATTCCCATGTTCAAAG
LOC_Os06g30894
OsAffx.27894.1.S1_at--499--1111Chr06:17950437..17950461 (25 bp)
AGTGTCGACACTACGCCATCTGATT
LOC_Os06g30894
OsAffx.27894.1.S1_at--321--5691Chr06:17950020..17950044 (25 bp)
GACTACCAACCAGCTATTTTTCAGA
LOC_Os06g30894
Target Sequence 
AGTTACACTCTCGTTAGGCTGCATACATCGAGCTGCAGGAGGAATGGCACTATGTACTCTTGTTACTCCTACTTTGTGGT
CGCTTCATGCTCTTCTTTTAACAATTGAAGCTGCTGGGTTGTCTTATGTCTCCCAAGTTCAGGGGACGCTTTTCCTTGCT
ATGGAAATTCTTTTATTGGAAGAAAATGGATATGTGGATCTTAGGCAGGAAATAGGTCATCTTATCAATGCAATAGTAGC
AGTAATTGGTCCTGAACTTGCTCCTGAGATAAGTTCCTCAAGTGAAACGGCTACGCTTATAGAATCAGTTAGATTTGCTC
AGCAGCTTGTTCTTTTTGCCCCTCAAGCTGTTCCTGTGCATTCCCATGTTCAAAGTCTTATCCCAACTCTTTACTCAAGA
CAGCCAAGCTTGAGACATTTGGCAGTGTCGACACTACGCCATCTGATTGAAAGAGATCCGCCAGAAGCTGTGAAACCCGG
CTTCTCCAGATTCTCAGAAGTTGACTACCAACCAGCTATTTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis