Browse Element(s) Details


OsAffx.15688.1.S1_at

Description tigr:9634.m02976
TID=OsAffx.15688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3088011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30860NANA6+17914926..17916086WRKY DNA binding domain containing protein, expressed
LOC_Os06g30870NANA6+17925660..17926442hypothetical protein
LOC_Os06g30880OsAffx.15688.1.S1_at11/116+17936487..17936844hypothetical protein
LOC_Os06g30894Os.11737.1.A1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30894OsAffx.27894.1.S1_at11/116+17937102..17969693HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15688.1.S1_at--867--9451Chr06:17936519..17936543 (25 bp)
TCTGCTTGGAGTTGCGCTAGGAGCA
LOC_Os06g30880
OsAffx.15688.1.S1_at--386--4831Chr06:17936534..17936558 (25 bp)
GCTAGGAGCAAAGCCGAACACAGTT
LOC_Os06g30880
OsAffx.15688.1.S1_at--501--2471Chr06:17936550..17936574 (25 bp)
AACACAGTTGACAGCGCCAAGGGTA
LOC_Os06g30880
OsAffx.15688.1.S1_at--396--871Chr06:17936597..17936621 (25 bp)
ATGGCGTGGTGATCGCGATTCTCCA
LOC_Os06g30880
OsAffx.15688.1.S1_at--594--6571Chr06:17936613..17936637 (25 bp)
GATTCTCCAGCTTTCGACAGTTCGG
LOC_Os06g30880
OsAffx.15688.1.S1_at--141--4871Chr06:17936622..17936646 (25 bp)
GCTTTCGACAGTTCGGTGGAGGCAA
LOC_Os06g30880
OsAffx.15688.1.S1_at--706--751Chr06:17936707..17936726 (20 bp)
AGGCAAGGGCAATGGCTTTTAGTGA
LOC_Os06g30880
OsAffx.15688.1.S1_at--528--10371Chr06:17936718..17936742 (25 bp)
TTTTAGTGAGATAAGCTACAGCAAC
LOC_Os06g30880
OsAffx.15688.1.S1_at--925--5351Chr06:17936748..17936772 (25 bp)
GAAGATGGTACCCTATGACGATGAT
LOC_Os06g30880
OsAffx.15688.1.S1_at--927--10111Chr06:17936761..17936785 (25 bp)
TATGACGATGATGCCATGCCAGCAA
LOC_Os06g30880
OsAffx.15688.1.S1_at--677--4431Chr06:17936773..17936797 (25 bp)
GCCATGCCAGCAATGAATACGTTAA
LOC_Os06g30880
Target Sequence 
TCTGCTTGGAGTTGCGCTAGGAGCAAAGCCGAACACAGTTGACAGCGCCAAGGGTAGTGGCAGAGGTCAGCGGCGAAGAT
GGCGTGGTGATCGCGATTCTCCAGCTTTCGACAGTTCGGTGGAGGCAAGGGCAATGGCTTTTAGTGAGATAAGCTACAGC
AACTCGGTGAAGATGGTACCCTATGACGATGATGCCATGCCAGCAATGAATACGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis