Browse Element(s) Details


OsAffx.31777.3.S1_at

Description tigr:9636.m02641
TID=OsAffx.31777.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2679011/11Transposable element protein, putative, Transposase_28
LOC_Os05g080401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26730NANA8+16127664..16128425retrotransposon, putative, centromere-specific
LOC_Os08g26740OsAffx.29372.1.S1_at11/118+16131084..16134652hypothetical protein
LOC_Os08g26750NANA8+16137870..16139106retrotransposon protein, putative, unclassified
LOC_Os08g26760NANA8+16140321..16141746retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26770NANA8+16142115..16143941retrotransposon protein, putative, unclassified
LOC_Os08g26780NANA8+16144476..16144910retrotransposon protein, putative, unclassified
LOC_Os08g26790OsAffx.31777.3.S1_at11/118+16145505..16146739Transposable element protein, putative, Transposase_28
LOC_Os08g26800Os.31929.3.S1_x_at2/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26800Os.31929.2.S1_x_at1/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26810OsAffx.17178.1.S1_at11/118+16169723..16170025hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31777.3.S1_at--966--3951Chr08:16146237..16146261 (25 bp)
CGGAGCACTCAGACGCTTGGCCAGT
LOC_Os08g26790
OsAffx.31777.3.S1_at--366--1131Chr08:16146215..16146239 (25 bp)
AGTGCCCGCGTCAATGGCCAAGTGG
LOC_Os08g26790
OsAffx.31777.3.S1_at--1043--4191Chr08:16146146..16146170 (25 bp)
CCCCGCCGAGGTTGTCAAGGCGAAT
LOC_Os08g26790
OsAffx.31777.3.S1_at--802--891Chr08:16146129..16146153 (25 bp)
AGGCGAATTGGCTCCTTTTTGAGTG
LOC_Os08g26790
OsAffx.31777.3.S1_at--797--10351Chr08:16146114..16146138 (25 bp)
TTTTTGAGTGTTCCGCCGTCTCTAT
LOC_Os08g26790
OsAffx.31777.3.S1_at--166--3771Chr08:16146095..16146119 (25 bp)
CTCTATCATCGCGAAGCCGAACATG
LOC_Os08g26790
OsAffx.31777.3.S1_at--295--3571Chr08:16146041..16146065 (25 bp)
CATACTCCTTCATAAGGTCGCTCAG
LOC_Os08g26790
OsAffx.31777.3.S1_at--916--10771Chr08:16145903..16145925 (23 bp)
TTGTTCTCCCTACTGGGTCGAAACG
LOC_Os08g26790
OsAffx.31777.3.S1_at--764--3191Chr08:16145694..16145718 (25 bp)
CAATGGCCGGATGAACCGGGTTCAT
LOC_Os08g26790
OsAffx.31777.3.S1_at--86--2952Chr08:16145581..16145605 (25 bp)
AAGGCGGCCAAGTTCGAACTTGCTG
LOC_Os08g26790
OsAffx.31777.3.S1_at--768--5471Chr08:16145566..16145590 (25 bp)
GAACTTGCTGCAGCGCGAACATTGC
LOC_Os08g26790
Target Sequence 
CGGAGCACTCAGACGCTTGGCCAGTGCCCGCGTCAATGGCCAAGTGGGATAGGAACTGGATGCAAAAATGGTTCTACATT
GCCAACCCCTACCCCGCCGAGGTTGTCAAGGCGAATTGGCTCCTTTTTGAGTGTTCCGCCGTCTCTATCATCGCGAAGCC
GAACATGGAGATCGATGGGACTCTCGAGTCCGGGCTCATACTCCTTCATAAGGTCGCTCAGCGGCTAAGCACCCGGGACC
TTTGTGAGGAGTTTTGCCTCCTTCGGATTTCCGCCCTCGCCCATGTCAGGGATGTTTCCGTGAACGAGAGCGAAGAGGTT
CTTGGGCTTCCCCGCCTTGTTCTCCCTACTGGGTCGAAACGCCAAACCAATGGCCGGATGAACCGGGTTCATATTGGCGA
ACTGCCAAGTCGATCGAACCCCTCCAGAGCCGGGGATGACGAAGTCGGCCCTTCGAAGAAACGCAAGCGTGCGGTCACGA
AAGGCGGCCAAGTTCGAACTTGCTGCAGCGCGAACATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31777.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis