Browse Element(s) Details


OsAffx.17178.1.S1_at

Description tigr:9636.m02643
TID=OsAffx.17178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2681011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26780NANA8+16144476..16144910retrotransposon protein, putative, unclassified
LOC_Os08g26790OsAffx.31777.3.S1_at11/118+16145505..16146739Transposable element protein, putative, Transposase_28
LOC_Os08g26800Os.31929.3.S1_x_at2/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26800Os.31929.2.S1_x_at1/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26810OsAffx.17178.1.S1_at11/118+16169723..16170025hypothetical protein
LOC_Os08g26820Os.49381.1.S1_at11/118+16174834..16177316expressed protein
LOC_Os08g26830OsAffx.29374.1.S1_at11/118+16180462..16180866hypothetical protein
LOC_Os08g26840Os.52344.1.S1_at10/118+16187161..16189218expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17178.1.S1_at--245--4111Chr08:16169830..16169854 (25 bp)
CGAAGCGAGCGCAACGGCGGAGGTC
LOC_Os08g26810
OsAffx.17178.1.S1_at--186--691Chr08:16169892..16169916 (25 bp)
ATGACCAGCTTGCTCGTCCAGACGC
LOC_Os08g26810
OsAffx.17178.1.S1_at--941--3911Chr08:16169906..16169930 (25 bp)
CGTCCAGACGCCCACCGTCACGATG
LOC_Os08g26810
OsAffx.17178.1.S1_at--155--1791Chr08:16169919..16169943 (25 bp)
ACCGTCACGATGCACTTAGCGCCGT
LOC_Os08g26810
OsAffx.17178.1.S1_at--27--4251Chr08:16169920..16169944 (25 bp)
CCGTCACGATGCACTTAGCGCCGTG
LOC_Os08g26810
OsAffx.17178.1.S1_at--203--4031Chr08:16169921..16169945 (25 bp)
CGTCACGATGCACTTAGCGCCGTGG
LOC_Os08g26810
OsAffx.17178.1.S1_at--60--7111Chr08:16169922..16169946 (25 bp)
GTCACGATGCACTTAGCGCCGTGGA
LOC_Os08g26810
OsAffx.17178.1.S1_at--209--9691Chr08:16169923..16169947 (25 bp)
TCACGATGCACTTAGCGCCGTGGAA
LOC_Os08g26810
OsAffx.17178.1.S1_at--985--3331Chr08:16169924..16169948 (25 bp)
CACGATGCACTTAGCGCCGTGGAAC
LOC_Os08g26810
OsAffx.17178.1.S1_at--14--1891Chr08:16169925..16169949 (25 bp)
ACGATGCACTTAGCGCCGTGGAACT
LOC_Os08g26810
OsAffx.17178.1.S1_at--980--6311Chr08:16169927..16169951 (25 bp)
GATGCACTTAGCGCCGTGGAACTCC
LOC_Os08g26810
Target Sequence 
CGAAGCGAGCGCAACGGCGGAGGTCCACGCCGGCGACGGGATGAGGACGACGACGGATAGGGATGACCAGCTTGCTCGTC
CAGACGCCCACCGTCACGATGCACTTAGCGCCGTGGAACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis