Browse Element(s) Details


Os.49381.1.S1_at

Description gb:AK101110.1
DB_XREF= gi:32986319
TID=Os.49381.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025F01, full insert sequence.
FL= gb:AK101110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2682011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26800Os.31929.3.S1_x_at2/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26800Os.31929.2.S1_x_at1/118+16148819..16150513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26810OsAffx.17178.1.S1_at11/118+16169723..16170025hypothetical protein
LOC_Os08g26820Os.49381.1.S1_at11/118+16174834..16177316expressed protein
LOC_Os08g26830OsAffx.29374.1.S1_at11/118+16180462..16180866hypothetical protein
LOC_Os08g26840Os.52344.1.S1_at10/118+16187161..16189218expressed protein
LOC_Os08g26850Os.5434.1.S1_at11/118+16198951..16200833expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49381.1.S1_at--244--2251Chr08:16175356..16175380 (25 bp)
AAATTCCTCAATCCGCCAGTGTCAT
LOC_Os08g26820
Os.49381.1.S1_at--118--8711Chr08:16175314..16175338 (25 bp)
TGTCCGGAGGTGCAGCATATATCGA
LOC_Os08g26820
Os.49381.1.S1_at--88--7512Chr08:16175210..16175234 (25 bp)
GTGGTCACTGGTCAGCGATAAAAAT
LOC_Os08g26820
Os.49381.1.S1_at--166--2251Chr08:16175189..16175213 (25 bp)
AAATTGAGCTTTCCTGGGTGCAGCC
LOC_Os08g26820
Os.49381.1.S1_at--815--1911Chr08:16175087..16175111 (25 bp)
ACGTGGGCATGCTCATGTCATGTGT
LOC_Os08g26820
Os.49381.1.S1_at--1031--251Chr08:16175058..16175082 (25 bp)
ATATCCATGAAGTCAGAGCTTGTGT
LOC_Os08g26820
Os.49381.1.S1_at--883--7691Chr08:16175019..16175043 (25 bp)
GGTGGCTTTATTATCCTCCAAATTG
LOC_Os08g26820
Os.49381.1.S1_at--1--9271Chr08:16175006..16175030 (25 bp)
TCCTCCAAATTGTGCTAGTCGAAGA
LOC_Os08g26820
Os.49381.1.S1_at--646--1191Chr08:16174959..16174983 (25 bp)
AGTTTTGGATGGATCGGGTCTTCTA
LOC_Os08g26820
Os.49381.1.S1_at--505--8271Chr08:16174900..16174924 (25 bp)
GGCAGTCATGGTCGGTGTACTACAT
LOC_Os08g26820
Os.49381.1.S1_at--1061--6611Chr08:16174869..16174893 (25 bp)
GTTGAATAGTACATTTTTCTCCGTG
LOC_Os08g26820
Target Sequence 
AAATTCCTCAATCCGCCAGTGTCATCGGTGATGTTGGAAGAATGTCCGGAGGTGCAGCATATATCGAAAAATATGGATAT
GGAAGCATCTGATGGNAGAAATTGATTCTGNAGATTAACTGTGGTGGATCATATTAGAAGAGAGCAGTGGTCACTGGTCA
GCGATAAAAATTGAGCTTTCCTGGGTGCAGCCGCCAAGGTGATTTTCTNGGGGATGTTTTGGGCCTGCTGCTGAAATGCT
GACAGGCTGATGATCTGAAATGGTTCGGAACGTGGGCATGCTCATGTCATGTGTGACAATATCCATGAAGTCAGAGCTTG
TGTTGGGTGAATTGTGAGGTGGCTTTATTATCCTCCAAATTGTGCTAGTCGAAGATACTTCTGTTTCTATATAAACCAGT
TTTGGATGGATCGGGTCTTCTAGNTTATGCTTCATTTTCTATTTATAAAAGAGACAGGCAGTCATGGTCGGTGTACTACA
TATGAATGTTGAATAGTACATTTTTCTCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis