Browse Element(s) Details


OsAffx.29374.1.S1_at

Description tigr:9636.m02645
TID=OsAffx.29374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26810OsAffx.17178.1.S1_at11/118+16169723..16170025hypothetical protein
LOC_Os08g26820Os.49381.1.S1_at11/118+16174834..16177316expressed protein
LOC_Os08g26830OsAffx.29374.1.S1_at11/118+16180462..16180866hypothetical protein
LOC_Os08g26840Os.52344.1.S1_at10/118+16187161..16189218expressed protein
LOC_Os08g26850Os.5434.1.S1_at11/118+16198951..16200833expressed protein
LOC_Os08g26860OsAffx.29375.1.S1_at11/118+16204636..16206095hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29374.1.S1_at--93--8551Chr08:16180511..16180535 (25 bp)
TGGAGACGACCACCAACTTCGAGTG
LOC_Os08g26830
OsAffx.29374.1.S1_at--882--2491Chr08:16180525..16180549 (25 bp)
AACTTCGAGTGGATCCGCCGTAGCC
LOC_Os08g26830
OsAffx.29374.1.S1_at--748--5871Chr08:16180558..16180582 (25 bp)
GAGCGCCCCTTCATCATAGATCCAA
LOC_Os08g26830
OsAffx.29374.1.S1_at--11--9611Chr08:16180571..16180595 (25 bp)
TCATAGATCCAACGGTAGCAGCGGC
LOC_Os08g26830
OsAffx.29374.1.S1_at--148--5071Chr08:16180588..16180663 (25 bp)
GCAGCGGCAGAATTTGACGGTGACA
LOC_Os08g26830
OsAffx.29374.1.S1_at--1069--3111Chr08:16180650..16180673 (24 bp)
AATTTGACGGTGACAGCAGGGAGCA
LOC_Os08g26830
OsAffx.29374.1.S1_at--498--1071Chr08:16180666..16180690 (25 bp)
AGGGAGCAGATCCACTATTGCCAGC
LOC_Os08g26830
OsAffx.29374.1.S1_at--1043--10211Chr08:16180681..16180705 (25 bp)
TATTGCCAGCCCTGGGAAGGCCTCT
LOC_Os08g26830
OsAffx.29374.1.S1_at--755--5291Chr08:16180696..16180720 (25 bp)
GAAGGCCTCTCCCTCAGAGATCCAG
LOC_Os08g26830
OsAffx.29374.1.S1_at--407--7531Chr08:16180736..16180760 (25 bp)
GTGGCACGGATCAGCCATTGCTGAC
LOC_Os08g26830
OsAffx.29374.1.S1_at--722--71Chr08:16180752..16180776 (25 bp)
ATTGCTGACCTCTAGAGCATCCCTT
LOC_Os08g26830
Target Sequence 
TGGAGACGACCACCAACTTCGAGTGGATCCGCCGTAGCCAGCCACGAGAGCGCCCCTTCATCATAGATCCAACGGTAGCA
GCGGCAGAATTTGACGGTGACAGCAGGGAGCAGATCCACTATTGCCAGCCCTGGGAAGGCCTCTCCCTCAGAGATCCAGC
GGCGGCGGCAAGGGGTGGCACGGATCAGCCATTGCTGACCTCTAGAGCATCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis