Browse Element(s) Details


OsAffx.29375.1.S1_at

Description tigr:9636.m02648
TID=OsAffx.29375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2686011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26830OsAffx.29374.1.S1_at11/118+16180462..16180866hypothetical protein
LOC_Os08g26840Os.52344.1.S1_at10/118+16187161..16189218expressed protein
LOC_Os08g26850Os.5434.1.S1_at11/118+16198951..16200833expressed protein
LOC_Os08g26860OsAffx.29375.1.S1_at11/118+16204636..16206095hypothetical protein
LOC_Os08g26870Os.9489.1.S1_s_at11/118+16207490..16212443wound-responsive protein, putative, expressed
LOC_Os08g26870Os.9489.1.S1_x_at10/118+16207490..16212443wound-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29375.1.S1_at--202--1091Chr08:16204982..16205006 (25 bp)
AGGGCTGTGGTGTTATTCTAGACTA
LOC_Os08g26860
OsAffx.29375.1.S1_at--744--6471Chr08:16205021..16205045 (25 bp)
GATACGCCCGGGAGGACACATATGA
LOC_Os08g26860
OsAffx.29375.1.S1_at--197--5571Chr08:16205331..16205355 (25 bp)
GAAAGAATCCCCTACGGGCGTGGAG
LOC_Os08g26860
OsAffx.29375.1.S1_at--61--4111Chr08:16205369..16205393 (25 bp)
CGACATCGATCTCGTGGGCACAGAG
LOC_Os08g26860
OsAffx.29375.1.S1_at--699--1771Chr08:16205838..16205862 (25 bp)
ACCTGGAATCCCTATGGTCCCAAAT
LOC_Os08g26860
OsAffx.29375.1.S1_at--599--9851Chr08:16205901..16205925 (25 bp)
TACACGGCGGAAGGTCACGACTCTC
LOC_Os08g26860
OsAffx.29375.1.S1_at--641--5711Chr08:16205919..16205943 (25 bp)
GACTCTCAGCTAGCGTACATTCTGG
LOC_Os08g26860
OsAffx.29375.1.S1_at--505--8071Chr08:16205965..16205989 (25 bp)
GGAGCATCGTCCTCAACAGCACAAA
LOC_Os08g26860
OsAffx.29375.1.S1_at--1139--2491Chr08:16205988..16206012 (25 bp)
AACATGGCGTCGACACAGGGAGGTC
LOC_Os08g26860
OsAffx.29375.1.S1_at--369--2131Chr08:16206002..16206026 (25 bp)
ACAGGGAGGTCACGGCCTAGAACCA
LOC_Os08g26860
OsAffx.29375.1.S1_at--370--10031Chr08:16206019..16206043 (25 bp)
TAGAACCACATCCTGAGCTACACGG
LOC_Os08g26860
Target Sequence 
AGGGCTGTGGTGTTATTCTAGACTATCGTCAACATGAGAGATACGCCCGGGAGGACACATATGAGAGGGGTGACACAAAG
CTCACGGTGAGGGGGGAAAGAATCCCCTACGGGCGTGGAGACAAGGTGGACGGCGACATCGATCTCGTGGGCACAGAGGA
GGAGGAGAAGCCCACCAAGCCACCACAATCAGCCCAACTAGCACCGACCTGGAATCCCTATGGTCCCAAATCCCCGATCC
AAGTCTCCAGCCGCAATCTCTTGGACGCCTACACGGCGGAAGGTCACGACTCTCAGCTAGCGTACATTCTGGACGCGGGG
AGGTCGGACCGTCGGAGCATCGTCCTCAACAGCACAAACATGGCGTCGACACAGGGAGGTCACGGCCTAGAACCACATCC
TGAGCTACACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis