Browse Element(s) Details


Os.9489.1.S1_s_at

Description gb:AK112035.1
DB_XREF= gi:37988698
TID=Os.9489.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G04, full insert sequence.
FL= gb:AK112035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2687011/11wound-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26840Os.52344.1.S1_at10/118+16187161..16189218expressed protein
LOC_Os08g26850Os.5434.1.S1_at11/118+16198951..16200833expressed protein
LOC_Os08g26860OsAffx.29375.1.S1_at11/118+16204636..16206095hypothetical protein
LOC_Os08g26870Os.9489.1.S1_s_at11/118+16207490..16212443wound-responsive protein, putative, expressed
LOC_Os08g26870Os.9489.1.S1_x_at10/118+16207490..16212443wound-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.9489.1.S1_s_at--458--5451Chr08:16207655..16207679 (25 bp)
GAACTGGATTATGTAAATTCCGACT
LOC_Os08g26870
Os.9489.1.S1_s_at--325--6551Chr08:16207649..16207673 (25 bp)
GATTATGTAAATTCCGACTGTTTCA
LOC_Os08g26870
Os.9489.1.S1_s_at--387--151Chr08:16207648..16207672 (25 bp)
ATTATGTAAATTCCGACTGTTTCAG
LOC_Os08g26870
Os.9489.1.S1_s_at--140--731Chr08:16207645..16207669 (25 bp)
ATGTAAATTCCGACTGTTTCAGTCT
LOC_Os08g26870
Os.9489.1.S1_s_at--12--7051Chr08:16207643..16207667 (25 bp)
GTAAATTCCGACTGTTTCAGTCTTT
LOC_Os08g26870
Os.9489.1.S1_s_at--757--3151Chr08:16207640..16207664 (25 bp)
AATTCCGACTGTTTCAGTCTTTCGG
LOC_Os08g26870
Os.9489.1.S1_s_at--494--10651Chr08:16207638..16207662 (25 bp)
TTCCGACTGTTTCAGTCTTTCGGAG
LOC_Os08g26870
Os.9489.1.S1_s_at--700--5731Chr08:16207634..16207658 (25 bp)
GACTGTTTCAGTCTTTCGGAGTAAA
LOC_Os08g26870
Os.9489.1.S1_s_at--655--1951Chr08:16207633..16207657 (25 bp)
ACTGTTTCAGTCTTTCGGAGTAAAG
LOC_Os08g26870
Os.9489.1.S1_s_at--381--6831Chr08:16207630..16207654 (25 bp)
GTTTCAGTCTTTCGGAGTAAAGAAT
LOC_Os08g26870
Os.9489.1.S1_s_at--944--10031Chr08:16207621..16207645 (25 bp)
TTTCGGAGTAAAGAATAATCTGTGG
LOC_Os08g26870
Target Sequence
GAACTGGATTATGTAAATTCCGACTGTTTCAGTCTTTCGGAGTAAAGAATAATCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9489.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis