Browse Element(s) Details


Os.52344.1.S1_at

Description gb:AK066547.1
DB_XREF= gi:32976565
TID=Os.52344.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069E22, full insert sequence.
FL= gb:AK066547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2684010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26810OsAffx.17178.1.S1_at11/118+16169723..16170025hypothetical protein
LOC_Os08g26820Os.49381.1.S1_at11/118+16174834..16177316expressed protein
LOC_Os08g26830OsAffx.29374.1.S1_at11/118+16180462..16180866hypothetical protein
LOC_Os08g26840Os.52344.1.S1_at10/118+16187161..16189218expressed protein
LOC_Os08g26850Os.5434.1.S1_at11/118+16198951..16200833expressed protein
LOC_Os08g26860OsAffx.29375.1.S1_at11/118+16204636..16206095hypothetical protein
LOC_Os08g26870Os.9489.1.S1_s_at11/118+16207490..16212443wound-responsive protein, putative, expressed
LOC_Os08g26870Os.9489.1.S1_x_at10/118+16207490..16212443wound-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52344.1.S1_at--137--2731Chr08:16187590..16187614 (25 bp)
AAGCACTTCGCGGACCTGTGCAAGG
LOC_Os08g26840
Os.52344.1.S1_at--1070--7111Chr08:16187386..16187410 (25 bp)
GTCATCCAGGCGGTCTACTCTGTTC
LOC_Os08g26840
Os.52344.1.S1_at--859--9511Chr08:16187373..16187397 (25 bp)
TCTACTCTGTTCTCGGTTACACAAA
LOC_Os08g26840
Os.52344.1.S1_at--760--6731Chr08:16187358..16187382 (25 bp)
GTTACACAAAACCAGGGAGCTAGCT
LOC_Os08g26840
Os.52344.1.S1_at--696--3991Chr08:16187326..16187350 (25 bp)
CGTGGCTGTGTGACGTATCGTGCTA
LOC_Os08g26840
Os.52344.1.S1_at--88--5771Chr08:16187315..16187339 (25 bp)
GACGTATCGTGCTACGTAGCAGCCA
LOC_Os08g26840
Os.52344.1.S1_at--909--6951Chr08:16187300..16187324 (25 bp)
GTAGCAGCCATGCAGTGGTCCCATG
LOC_Os08g26840
Os.52344.1.S1_at--951--7231Chr08:16187283..16187307 (25 bp)
GTCCCATGCGCGTAGCAGCATATAT
LOC_Os08g26840
Os.52344.1.S1_at--316--451Chr08:16187250..16187274 (25 bp)
ATCTATATAGTGCATGTTTTCAGTG
LOC_Os08g26840
Os.52344.1.S1_at--74--10251Chr08:16187187..16187211 (25 bp)
TTTGAGAACCGAAACTTGTAAGTAT
LOC_Os08g26840
Os.52344.1.S1_at--417--1411Chr08:16187146..16187170 (25 bp)
AGAAAGACTTAACAGCCCATGTTTC
NONE
Target Sequence 
AAGCACTTCGCGGACCTGTGCAAGGGGGCGGTGTTCGACGCGGACGACGCCGACATGAACTACCTGAGGCCGGTGTGCCA
GGTGCTCGAGCGGCGGTTCCAGAGCCGGCCGCGGCGGTGGATGGCGTGGCTGAAGAAGAAGTACTTCGCCAACCCGTGGC
TCATCGCCGGCCTCGTGGCCGCCACCGTTGGCCTCGTCTACACCGTCATCCAGGCGGTCTACTCTGTTCTCGGTTACACA
AAACCAGGGAGCTAGCTGTGGTGACGTGGCTGTGTGACGTATCGTGCTACGTAGCAGCCATGCAGTGGTCCCATGCGCGT
AGCAGCATATATATATATATATCTATATAGTGCATGTTTTCAGTGGAGTGTAAGAATAGTCAGCTTAAATATGTAAGTTC
TTTTTTGAGAACCGAAACTTGTAAGTATATGTTGTTTAGATGTAAGAAAGACTTAACAGCCCATGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis