Browse Element(s) Details


OsAffx.14701.1.S1_at

Description tigr:9633.m01312
TID=OsAffx.14701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1492011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14870OsAffx.4340.1.S1_at11/115+8426921..8427440hypothetical protein
LOC_Os05g14880Os.53594.1.S1_at11/115+8429808..8431098expressed protein
LOC_Os05g14890OsAffx.14700.1.S1_at11/115+8434877..8436271hypothetical protein
LOC_Os05g14900OsAffx.26894.1.S1_at11/115+8439795..8441746expressed protein
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein
LOC_Os05g14930OsAffx.26896.1.S1_at11/115+8454704..8457403expressed protein
LOC_Os05g14940Os.7726.1.S1_at4/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14940OsAffx.26780.1.S1_at1/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14950OsAffx.26897.1.S1_at11/115+8461716..8463394hypothetical protein
LOC_Os05g14960OsAffx.26898.1.S1_at11/115+8467470..8468034hypothetical protein
LOC_Os05g14970OsAffx.4341.1.S1_at11/115+8471366..8473983hypothetical protein
LOC_Os05g14980OsAffx.4342.1.S1_at6/115+8476843..8480270hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14701.1.S1_at--1104--1311Chr05:8451376..8451832 (25 bp)
AGAGGCAGAGCAACCACAAATGAAC
LOC_Os05g14920
OsAffx.14701.1.S1_at--716--5951Chr05:8451816..8451839 (24 bp)
GAGCAACCACAAATGAACAACCAGA
LOC_Os05g14920
OsAffx.14701.1.S1_at--488--5511Chr05:8451829..8451853 (25 bp)
GAACAACCAGATGTATCTGACTACA
LOC_Os05g14920
OsAffx.14701.1.S1_at--726--6271Chr05:8451838..8451862 (25 bp)
GATGTATCTGACTACACACTAGGAG
LOC_Os05g14920
OsAffx.14701.1.S1_at--187--6911Chr05:8451841..8451865 (25 bp)
GTATCTGACTACACACTAGGAGCTC
LOC_Os05g14920
OsAffx.14701.1.S1_at--647--451Chr05:8451843..8451867 (25 bp)
ATCTGACTACACACTAGGAGCTCCA
LOC_Os05g14920
OsAffx.14701.1.S1_at--747--3851Chr05:8451845..8451869 (25 bp)
CTGACTACACACTAGGAGCTCCAAT
LOC_Os05g14920
OsAffx.14701.1.S1_at--1143--5691Chr05:8451847..8451871 (25 bp)
GACTACACACTAGGAGCTCCAATTT
LOC_Os05g14920
OsAffx.14701.1.S1_at--704--8071Chr05:8451859..8451883 (25 bp)
GGAGCTCCAATTTGTATGCCACAGC
LOC_Os05g14920
OsAffx.14701.1.S1_at--386--4791Chr05:8451862..8451886 (25 bp)
GCTCCAATTTGTATGCCACAGCTCT
LOC_Os05g14920
OsAffx.14701.1.S1_at--300--9211Chr05:8451864..8451888 (25 bp)
TCCAATTTGTATGCCACAGCTCTCA
LOC_Os05g14920
Target Sequence 
AGAGGCAGAGCAACCACAAATGAACAACCAGATGTATCTGACTACACACTAGGAGCTCCAATTTGTATGCCACAGCTCTC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis