Browse Element(s) Details


OsAffx.26894.1.S1_at

Description tigr:9633.m01310
TID=OsAffx.26894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1490011/11expressed protein
LOC_Os04g077601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14850Os.52782.1.S1_at1/115+8417761..8418776hypothetical protein
LOC_Os05g14860OsAffx.14699.1.S1_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14860OsAffx.14699.1.S1_s_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14870OsAffx.4340.1.S1_at11/115+8426921..8427440hypothetical protein
LOC_Os05g14880Os.53594.1.S1_at11/115+8429808..8431098expressed protein
LOC_Os05g14890OsAffx.14700.1.S1_at11/115+8434877..8436271hypothetical protein
LOC_Os05g14900OsAffx.26894.1.S1_at11/115+8439795..8441746expressed protein
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein
LOC_Os05g14930OsAffx.26896.1.S1_at11/115+8454704..8457403expressed protein
LOC_Os05g14940Os.7726.1.S1_at4/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14940OsAffx.26780.1.S1_at1/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14950OsAffx.26897.1.S1_at11/115+8461716..8463394hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26894.1.S1_at--326--7811Chr05:8439829..8439853 (25 bp)
GGTCTGATTCGACCATCAACGATGT
LOC_Os05g14900
OsAffx.26894.1.S1_at--338--2591Chr05:8439846..8439870 (25 bp)
AACGATGTCGCGATAACCCAGGCAG
LOC_Os05g14900
OsAffx.26894.1.S1_at--548--2611Chr05:8439860..8439884 (25 bp)
AACCCAGGCAGTGATCGGGAAGCTC
LOC_Os05g14900
OsAffx.26894.1.S1_at--1007--1771Chr05:8439888..8439912 (25 bp)
ACCGGTGTGGGCTACCTGTCGCTGA
LOC_Os05g14900
OsAffx.26894.1.S1_at--1124--9211Chr05:8439948..8439972 (25 bp)
TCCACGGTGCCCATTAACGAGTTTT
LOC_Os05g14900
OsAffx.26894.1.S1_at--824--2571Chr05:8439963..8439987 (25 bp)
AACGAGTTTTGGTTCCTCACAGCTA
LOC_Os05g14900
OsAffx.26894.1.S1_at--569--2151Chr05:8439981..8440005 (25 bp)
ACAGCTATCAGCCTAGTGCTTGCAT
LOC_Os05g14900
OsAffx.26894.1.S1_at--288--70126Chr12:10618320..10618339 (20 bp)
GTACTCAACAAGTCATACCAACGGG
NONE
OsAffx.26894.1.S1_at--567--7031Chr05:8441645..8441669 (25 bp)
GTACAATTTTATCCACAAGACACGA
LOC_Os05g14900
OsAffx.26894.1.S1_at--185--65930Chr11:11113839..11113860 (22 bp)
GATTCCACACATGTTACCATGCGCT
NONE
OsAffx.26894.1.S1_at--1059--9971Chr05:8441682..8441706 (25 bp)
TACCATGCGCTGAAGACTACCGCGA
LOC_Os05g14900
Target Sequence 
GGTCTGATTCGACCATCAACGATGTCGCGATAACCCAGGCAGTGATCGGGAAGCTCGTCACCGGTGTGGGCTACCTGTCG
CTGACGTGGTCGACGGTGGTCCTCCTCGGCGGCTTCGTCTCCACGGTGCCCATTAACGAGTTTTGGTTCCTCACAGCTAT
CAGCCTAGTGCTTGCATCCACGCAAAACAAGTACTTCCTCCGTTTCACAATGAAAAATAAAGCAAGACTGAGTACCAACC
ACCGTACTCAACAAGTCATACCAACGGGAAGAGGTGTACAATTTTATCCACAAGACACGATTCCACACATGTTACCATGC
GCTGAAGACTACCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis