Browse Element(s) Details


OsAffx.14946.1.S1_at

Description tigr:9633.m03118
TID=OsAffx.14946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3376011/11pentatricopeptide, putative, expressed
LOC_Os03g069201/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33730Os.18468.1.S1_at11/115+19785334..19788132serine hydrolase, putative, expressed
LOC_Os05g33740Os.46012.2.S1_x_at6/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.46012.3.S1_x_at5/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.27088.1.A1_x_at1/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.54691.1.S1_x_at1/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33750Os.47130.4.A1_x_at3/115+19794987..19799846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33750Os.27455.2.S1_at1/115+19794987..19799846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33760OsAffx.14946.1.S1_at11/115+19811318..19816681pentatricopeptide, putative, expressed
LOC_Os05g33770OsAffx.4509.1.S1_s_at11/115+19817556..19817954hypothetical protein
LOC_Os05g33770OsAffx.4509.1.S1_x_at11/115+19817556..19817954hypothetical protein
LOC_Os05g33780NANA5+19819409..19819771hypothetical protein
LOC_Os05g33790OsAffx.19542.3.S1_x_at7/115+19827393..19831614retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33800OsAffx.4343.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33800OsAffx.15708.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33810Os.19407.1.S1_at11/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.45957.3.S1_x_at3/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.49445.1.S1_at1/115+19840016..19849297SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14946.1.S1_at--734--7191Chr05:19815393..19815417 (25 bp)
GTCGGAGCTTATACCACTGCAAGAT
LOC_Os05g33760
OsAffx.14946.1.S1_at--660--8851Chr05:19815366..19815390 (25 bp)
TGATGTATGGGAAGCAACACCGGTT
LOC_Os05g33760
OsAffx.14946.1.S1_at--1018--2471Chr05:19815351..19815375 (25 bp)
AACACCGGTTGCCAGAGATGCATGG
LOC_Os05g33760
OsAffx.14946.1.S1_at--780--8452Chr03:3485555..3485621 (24 bp)
TGGCCGAGGCCAACACAATACTTTG
LOC_Os03g06920
OsAffx.14946.1.S1_at--1132--1771Chr05:19813452..19813476 (25 bp)
ACCGGTGCTCGGTGTGGATTCATCG
LOC_Os05g33760
OsAffx.14946.1.S1_at--738--7531Chr05:19813424..19813448 (25 bp)
GTGGCAGCACCTTATCTTCGTCAAT
LOC_Os05g33760
OsAffx.14946.1.S1_at--939--431Chr05:19813411..19813435 (25 bp)
ATCTTCGTCAATGCAGGAGGAGCCA
LOC_Os05g33760
OsAffx.14946.1.S1_at--835--3071Chr05:19813298..19813322 (25 bp)
AATCAGATTGGTAGCCGTGGCGCCT
LOC_Os05g33760
OsAffx.14946.1.S1_at--342--4171Chr05:19813278..19813302 (25 bp)
CGCCTGCATGGATGGTGGTGCTCAA
LOC_Os05g33760
OsAffx.14946.1.S1_at--810--7731Chr05:19813265..19813289 (25 bp)
GGTGGTGCTCAATGCGATACGAGAA
LOC_Os05g33760
OsAffx.14946.1.S1_at--264--9931Chr05:19813248..19813272 (25 bp)
TACGAGAAGAAAATGCCCTGCGAAA
LOC_Os05g33760
Target Sequence 
GTCGGAGCTTATACCACTGCAAGATGGTGATGTATGGGAAGCAACACCGGTTGCCAGAGATGCATGGGGTTTTGGATGAG
ATGGAGTTTTTTCGGTTTGACCGAACAAAGAAAACCTTTTGGATCATGTATAAGGCATATGTGAGTTCTGGGCGGATGGC
CGAGGCCAACACAATACTTTGCATGATGGGGAAGCATGGTTTTGGATTCCCCCGTGGCGGGACTGGAGCCGATGTGGAAG
AAGCCAGTGATGGCATAGGGGGAGGAGATGTATCCGGGGTTAGGGACTCACCGGTGCTCGGTGTGGATTCATCGGAGGTG
GCAGCACCTTATCTTCGTCAATGCAGGAGGAGCCAGCGCCAAAGAAGGTGGCGCTTGGTGGAGGGAGAGGTGATGGGGAT
GGCCCTGACCTGGGCGGCTGGGAAGACAGCCTTGACAGCGCCAAATCAGATTGGTAGCCGTGGCGCCTGCATGGATGGTG
GTGCTCAATGCGATACGAGAAGAAAATGCCCTGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis