Browse Element(s) Details


Os.18468.1.S1_at

Description gb:AK074026.1
DB_XREF= gi:32984049
TID=Os.18468.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079J03, full insert sequence.
FL= gb:AK074026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3373011/11serine hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33710Os.57321.1.S1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33710Os.15190.1.A1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33720Os.40855.2.S1_x_at7/115+19780887..19781879hypothetical protein
LOC_Os05g33720Os.40855.4.S1_x_at1/115+19780887..19781879hypothetical protein
LOC_Os05g33730Os.18468.1.S1_at11/115+19785334..19788132serine hydrolase, putative, expressed
LOC_Os05g33740Os.46012.2.S1_x_at6/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.46012.3.S1_x_at5/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.27088.1.A1_x_at1/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.54691.1.S1_x_at1/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33750Os.47130.4.A1_x_at3/115+19794987..19799846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33750Os.27455.2.S1_at1/115+19794987..19799846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33760OsAffx.14946.1.S1_at11/115+19811318..19816681pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18468.1.S1_at--131--9111Chr05:19787605..19787629 (25 bp)
TGCTGCTTGGGATCGCAATGCCGTC
LOC_Os05g33730
Os.18468.1.S1_at--535--1451Chr05:19787652..19787676 (25 bp)
AGAAGCTAGCTCCATGCTGTCTGAT
LOC_Os05g33730
Os.18468.1.S1_at--178--9711Chr05:19787686..19787710 (25 bp)
TCAAATGGTGACTCGGTTGCGTCGA
LOC_Os05g33730
Os.18468.1.S1_at--967--2011Chr05:19787752..19787776 (25 bp)
ACTAATCATCGTTCATCCTTTTCTT
LOC_Os05g33730
Os.18468.1.S1_at--649--7691Chr05:19787853..19787877 (25 bp)
GGGTAGTTCCATGTCTGTCATGCAT
LOC_Os05g33730
Os.18468.1.S1_at--374--632Chr05:19787872..19787896 (25 bp)
ATGCATGCCTCCATTAGTACTACTA
LOC_Os05g33730
Os.18468.1.S1_at--440--7011Chr05:19787888..19787912 (25 bp)
GTACTACTACTGTTGTGACTTTGGT
LOC_Os05g33730
Os.18468.1.S1_at--759--10311Chr05:19787939..19787963 (25 bp)
TTTCTTTTAATCTCGCATTCCATCC
LOC_Os05g33730
Os.18468.1.S1_at--363--8051Chr05:19788034..19788058 (25 bp)
GGAGATTTGAGGAGGCATGCCCCTT
LOC_Os05g33730
Os.18468.1.S1_at--393--4191Chr05:19788054..19788078 (25 bp)
CCCTTTTGTTGCTGTTGATGTTCTA
LOC_Os05g33730
Os.18468.1.S1_at--386--2131Chr05:19788100..19788124 (25 bp)
ACAGGATTGGATGGTGCTCTCTTGC
LOC_Os05g33730
Target Sequence 
TGCTGCTTGGGATCGCAATGCCGTCGTCTGCTCTTGTGTGGCGAAGGAGAAGCTAGCTCCATGCTGTCTGATCAGCTCTA
ATCAAATGGTGACTCGGTTGCGTCGAGGAAGAAGAAGAAAGTCGTCCGTCGTCGTCGTCCTTGTTCCACTAATCATCGTT
CATCCTTTTCTTTTTTTGTGGTTTGGATCGTTCTTTGATCCATGTTTTCCNATGTTTTGCCTGGGGTCAGTGTAGTCAAG
ACAAGTTGAGGGTAGTTCCATGTCTGTCATGCATGCCTCCATTAGTACTACTACTGTTGTGACTTTGGTTGATGGAGAGA
AGAAGCATGTTTTTTTTTCTTTTAATCTCGCATTCCATCCATCTTCTCCATGTACTCCAAAGAGAGGAAAGTTGCTATCT
AACGTTATGTGTACAGTGATCGATCAACAAGGAGATTTGAGGAGGCATGCCCCTTTTGTTGCTGTTGATGTTCTAGTTTT
ANCTTCTTTCTTGTTAACAGGATTGGATGGTGCTCTCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis