Browse Element(s) Details


Os.23654.2.S1_x_at

Description gb:NM_191617.1
DB_XREF= gi:34910317
GEN=P0013F10.18
TID=Os.23654.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013F10.18 (P0013F10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0013F10.18 (P0013F10.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0819011/11Transcriptional corepressor LEUNIG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein
LOC_Os01g08190Os.23654.2.S1_x_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.23654.1.S1_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.10429.1.S1_at1/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08200Os.7173.1.S1_s_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
LOC_Os01g08200Os.7173.1.S1_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
LOC_Os01g08209NANA1+3998223..3998416NA
LOC_Os01g08220NANA1+4000461..4001748oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g08229NANA1+4004285..4004452NA

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23654.2.S1_x_at--818--8751Chr01:3979035..3979059 (25 bp)
TGTACGATTCAGTCCAAGCATTCCA
LOC_Os01g08190
Os.23654.2.S1_x_at--1122--3091Chr01:3979590..3979614 (25 bp)
AATTCGAACGTTCACTGGGCACTCA
LOC_Os01g08190
Os.23654.2.S1_x_at--284--8651Chr01:3979605..3979629 (25 bp)
TGGGCACTCAGCATCTGTTATGTCA
LOC_Os01g08190
Os.23654.2.S1_x_at--594--6791Chr01:3979621..3979645 (25 bp)
GTTATGTCACTGGATTTCCACCCAA
LOC_Os01g08190
Os.23654.2.S1_x_at--671--7991Chr01:3979650..3979674 (25 bp)
GGATGACCTCATTTGTTCTTGTGAT
LOC_Os01g08190
Os.23654.2.S1_x_at--879--1691Chr01:3980100..3980124 (25 bp)
AGCCAGCTGAGATTTCAACCACGTC
LOC_Os01g08190
Os.23654.2.S1_x_at--350--5271Chr01:3980153..3980177 (25 bp)
GAATGCTGTCTCTATACTTGATGTG
LOC_Os01g08190
Os.23654.2.S1_x_at--861--791Chr01:3980173..3980197 (25 bp)
ATGTGGAGACTCAAGCTTGCCTTAG
LOC_Os01g08190
Os.23654.2.S1_x_at--470--6131Chr01:3980559..3980582 (24 bp)
GAGGGCCACACAAAGCATGTCGATT
LOC_Os01g08190
Os.23654.2.S1_x_at--722--5631Chr01:3980630..3981152 (25 bp)
GACACGGTGAAGTCTCTTGAGCTGT
LOC_Os01g08190
Os.23654.2.S1_x_at--764--5451Chr01:3981171..3981195 (25 bp)
GAACGATGACGCTCGCAGCTCATGA
LOC_Os01g08190
Target Sequence 
TGTACGATTCAGTCCAAGCATTCCACGCCTTGCTACCTCCTCATTTGATAAAACTGTCAGGGTCTGGGATGCTGACAATC
AAGGCTATTCAATTCGAACGTTCACTGGGCACTCAGCATCTGTTATGTCACTGGATTTCCACCCAAACAAGGATGACCTC
ATTTGTTCTTGTGATGGGGATAATGAAATTCGATTCTGGAGTATCAACAATGGAAACATCGTCCGGATATTTAAGGGAGG
ATCAAGCCAGCTGAGATTTCAACCACGTCATGGGGGATATCTTGCAGTAGCTTCGGAGAATGCTGTCTCTATACTTGATG
TGGAGACTCAAGCTTGCCTTAGGAGATTTGAGGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAA
TATGTTGTATCTGTCAGTGAAGACACGGTGAAGTCTCTTGAGCTGTGGGACATGTCGGAGAACAGAACGATGACGCTCGC
AGCTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23654.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis