Browse Element(s) Details


Os.6747.1.S1_a_at

Description gb:AK069731.1
DB_XREF= gi:32979755
TID=Os.6747.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0432C03.41 (P0432C03.41), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028M23, full insert sequence.
FL= gb:AK069731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7154011/11expressed protein
LOC_Os01g7159011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71510NANA1+41738343..41741570transposon protein, putative, unclassified
LOC_Os01g71520NANA1+41742186..41748341retrotransposon protein, putative, unclassified
LOC_Os01g71530OsAffx.22947.1.S1_x_at11/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.3.S1_x_at5/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.2.S1_x_at3/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.5.S1_x_at1/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71540Os.6747.1.S1_a_at11/111+41766154..41774373expressed protein
LOC_Os01g71540Os.23761.1.S1_at1/111+41766154..41774373expressed protein
LOC_Os01g71549OsAffx.24004.1.S1_at10/111+41776407..41778267hypothetical protein
LOC_Os01g71558Os.26710.1.S1_at2/111+41781225..41781890hypothetical protein
LOC_Os01g71570OsAffx.24002.2.S1_s_at8/111+41784119..41786745hypothetical protein
LOC_Os01g71570OsAffx.24002.1.S1_at4/111+41784119..41786745hypothetical protein
LOC_Os01g71590Os.6747.1.S1_a_at11/111+41797132..41805170expressed protein
LOC_Os01g71590Os.23761.1.S1_at1/111+41797132..41805170expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6747.1.S1_a_at--649--3592Chr01:41804405..41804429 (25 bp)
CATTCAGAATGCTCACGAAGGTGCT
LOC_Os01g71590
Os.6747.1.S1_a_at--1106--8492Chr01:41804628..41804652 (25 bp)
TGGCATGTTGCTGTTGATAACCATA
LOC_Os01g71590
Os.6747.1.S1_a_at--688--2832Chr01:41804661..41804685 (25 bp)
AAGTATTATGCTGCGCACGTCTTTT
LOC_Os01g71590
Os.6747.1.S1_a_at--1149--3932Chr01:41804678..41804702 (25 bp)
CGTCTTTTGCGGACACCTTAAGAAG
LOC_Os01g71590
Os.6747.1.S1_a_at--889--6672Chr01:41804703..41804727 (25 bp)
GTTGCGAATATACATGTGACCACCA
LOC_Os01g71590
Os.6747.1.S1_a_at--1113--7372Chr01:41804718..41804742 (25 bp)
GTGACCACCAAAACCTTGTTCAAAG
LOC_Os01g71590
Os.6747.1.S1_a_at--649--7472Chr01:41804784..41804808 (25 bp)
GTGTGTTGTATTCGGCTTGAACCCT
LOC_Os01g71590
Os.6747.1.S1_a_at--485--6032Chr01:41804817..41804841 (25 bp)
GAGATGTGGACATGCGTGCCAGCAT
LOC_Os01g71590
Os.6747.1.S1_a_at--134--7292Chr01:41804832..41804856 (25 bp)
GTGCCAGCATGTTGTACTTGTACCA
LOC_Os01g71590
Os.6747.1.S1_a_at--995--3592Chr01:41804848..41804872 (25 bp)
CTTGTACCAGGTTCAACGTTAGCTT
LOC_Os01g71590
Os.6747.1.S1_a_at--332--2452Chr01:41804900..41804924 (25 bp)
AAAATGCCATTTTTCTTTATCAGCA
LOC_Os01g71590
Target Sequence 
CATTCAGAATGCTCACGAAGGTGCTAAAGACATGAGCAAAAAGGTGCCTAGTGGCATGTTGCTGTTGATAACCATAGGTC
TGCAAAGTATTATGCTGCGCACGTCTTTTGCGGACACCTTAAGAAGGTTGCGAATATACATGTGACCACCAAAACCTTGT
TCAAAGTGATGCTAAGTACTTTAAATTATGATGAAATGCAACATGCCGTGTGTTGTATTCGGCTTGAACCCTCGACCCGC
GAGATGTGGACATGCGTGCCAGCATGTTGTACTTGTACCAGGTTCAACGTTAGCTTGAACACTGAACAAGTTAAATGTGT
TGCAAAATGCCATTTTTCTTTATCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6747.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis