Browse Element(s) Details


OsAffx.24002.1.S1_at

Description gb:NM_189727.1
DB_XREF= gi:34906537
GEN=P0432C03.26
TID=OsAffx.24002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0432C03.26 (P0432C03.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7147410/11Lichenase II precursor, putative, expressed
LOC_Os01g715704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420Os.13966.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.13966.1.S1_x_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_x_at9/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430OsAffx.21885.3.S1_s_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71430OsAffx.21885.3.S1_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71440OsAffx.9679.1.S1_at11/111+41717794..41718948F-box domain containing protein
LOC_Os01g71450OsAffx.21885.2.S1_s_at11/111+41720313..41721146F-box domain containing protein
LOC_Os01g71460Os.36487.1.S1_at10/111+41721588..41723052F-box domain containing protein, expressed
LOC_Os01g71474OsAffx.24002.2.S1_s_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474Os.7551.1.S1_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.24002.1.S1_at10/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_s_at8/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_x_at1/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71490NANA1+41730319..41731253hypothetical protein
LOC_Os01g71510NANA1+41738343..41741570transposon protein, putative, unclassified
LOC_Os01g71520NANA1+41742186..41748341retrotransposon protein, putative, unclassified
LOC_Os01g71530OsAffx.22947.1.S1_x_at11/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.3.S1_x_at5/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.2.S1_x_at3/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.5.S1_x_at1/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0031225cellular_componentanchored to membrane
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24002.1.S1_at--567--10692Chr01:41784349..41784533 (25 bp)
TTGCCGAACGTACGACATGAACGCT
LOC_Os01g71570
OsAffx.24002.1.S1_at--202--8172Chr01:41784579..41784603 (25 bp)
GGAAAATTCTCACCGTTCCTGTGAA
LOC_Os01g71570
OsAffx.24002.1.S1_at--1085--7352Chr01:41784599..41784623 (25 bp)
GTGAAATTCGTGCACGATTACGCAT
LOC_Os01g71570
OsAffx.24002.1.S1_at--470--5092Chr01:41784610..41784634 (25 bp)
GCACGATTACGCATACTACTGTATT
LOC_Os01g71570
OsAffx.24002.1.S1_at--1094--2291Chr01:41727134..41727158 (25 bp)
AAATGGACACGGTTGCATGCCTGCA
LOC_Os01g71474
OsAffx.24002.1.S1_at--970--591Chr01:41727118..41727142 (25 bp)
ATGCCTGCATGCATGCGAACGAATT
LOC_Os01g71474
OsAffx.24002.1.S1_at--1024--4971Chr01:41727108..41727132 (25 bp)
GCATGCGAACGAATTGGACTGTCCA
LOC_Os01g71474
OsAffx.24002.1.S1_at--568--5731Chr01:41727092..41727116 (25 bp)
GACTGTCCAACAGTCGTGCTGCAGA
LOC_Os01g71474
OsAffx.24002.1.S1_at--898--7191Chr01:41727080..41727104 (25 bp)
GTCGTGCTGCAGACGTTGGAACAGA
LOC_Os01g71474
OsAffx.24002.1.S1_at--273--8511Chr01:41727064..41727088 (25 bp)
TGGAACAGACGTTTTCAATTCCATT
LOC_Os01g71474
OsAffx.24002.1.S1_at--592--9731NONE
TCAATTCCATTTCCCTTAAACGTCA
NONE
Target Sequence 
TTGCCGAACGTACGACATGAACGCTATGCATGGAAATATACAATGCAAACGTTTGGTTTGATGAAACACGGGAAAATTCT
CACCGTTCCTGTGAAATTCGTGCACGATTACGCATACTACTGTATTAAGAAACTACTATCGAAATGGACACGGTTGCATG
CCTGCATGCATGCGAACGAATTGGACTGTCCAACAGTCGTGCTGCAGACGTTGGAACAGACGTTTTCAATTCCATTTCCC
TTAAACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis