Browse Element(s) Details


OsAffx.21885.2.S1_s_at

Description gb:NM_189724.1
DB_XREF= gi:34906531
GEN=P0432C03.23
TID=OsAffx.21885.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0432C03.23 (P0432C03.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7145011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420Os.13966.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.13966.1.S1_x_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_x_at9/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430OsAffx.21885.3.S1_s_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71430OsAffx.21885.3.S1_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71440OsAffx.9679.1.S1_at11/111+41717794..41718948F-box domain containing protein
LOC_Os01g71450OsAffx.21885.2.S1_s_at11/111+41720313..41721146F-box domain containing protein
LOC_Os01g71460Os.36487.1.S1_at10/111+41721588..41723052F-box domain containing protein, expressed
LOC_Os01g71474OsAffx.24002.2.S1_s_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474Os.7551.1.S1_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.24002.1.S1_at10/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_s_at8/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_x_at1/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71490NANA1+41730319..41731253hypothetical protein
LOC_Os01g71510NANA1+41738343..41741570transposon protein, putative, unclassified
LOC_Os01g71520NANA1+41742186..41748341retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21885.2.S1_s_at--424--8351Chr01:41720612..41720636 (25 bp)
GGCGGGTTCGGCATGTCGTTCCTCC
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--487--8271Chr01:41720603..41720627 (25 bp)
GGCATGTCGTTCCTCCGTCCAGGCG
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--290--7251Chr01:41720587..41720611 (25 bp)
GTCCAGGCGCCAAATGCTGGACGGC
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--403--7291Chr01:41720561..41720585 (25 bp)
GTGCGCGTCCCGAAATGGATGAAGC
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--329--1231Chr01:41720533..41720557 (25 bp)
AGTTCGTCGACGTCGTGTTCCACCA
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--682--9411Chr01:41720521..41720545 (25 bp)
TCGTGTTCCACCAGGGCGCGTTCTA
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--412--3991Chr01:41720426..41720450 (25 bp)
CGTGGGTCTCCCTCGTGGTGTCGAT
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--829--9471Chr01:41720420..41720444 (25 bp)
TCTCCCTCGTGGTGTCGATCGGCGG
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--603--5831Chr01:41720391..41720415 (25 bp)
GACCTGCTCATGGTGTCTCGGTTGC
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--683--9091Chr01:41720387..41720411 (25 bp)
TGCTCATGGTGTCTCGGTTGCACGA
LOC_Os01g71450
OsAffx.21885.2.S1_s_at--402--3511Chr01:41720383..41720407 (25 bp)
CATGGTGTCTCGGTTGCACGAGCGC
LOC_Os01g71450
Target Sequence
GGCGGGTTCGGCATGTCGTTCCTCCGTCCAGGCGCCAAATGCTGGACGGCGGTGCGCGTCCCGAAATGGATGAAGCAAAA
GTTCGTCGACGTCGTGTTCCACCAGGGCGCGTTCTACACGCCGAGGCAGGAGTGCGCGTGGGTCTCCCTCGTGGTGTCGA
TCGGCGGCGGCGACCTGCTCATGGTGTCTCGGTTGCACGAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21885.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis