Browse Element(s) Details


Os.13966.1.S1_x_at

Description gb:AK107393.1
DB_XREF= gi:32992602
TID=Os.13966.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0432C03.20 (P0432C03.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D02, full insert sequence.
FL= gb:AK107393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7142011/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420Os.13966.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.13966.1.S1_x_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_x_at9/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430OsAffx.21885.3.S1_s_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71430OsAffx.21885.3.S1_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71440OsAffx.9679.1.S1_at11/111+41717794..41718948F-box domain containing protein
LOC_Os01g71450OsAffx.21885.2.S1_s_at11/111+41720313..41721146F-box domain containing protein
LOC_Os01g71460Os.36487.1.S1_at10/111+41721588..41723052F-box domain containing protein, expressed
LOC_Os01g71474OsAffx.24002.2.S1_s_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474Os.7551.1.S1_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.24002.1.S1_at10/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_s_at8/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_x_at1/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71490NANA1+41730319..41731253hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13966.1.S1_x_at--1124--5511Chr01:41711884..41711908 (25 bp)
GAAAACCCTGTGTTGGCTCTATCAA
LOC_Os01g71420
Os.13966.1.S1_x_at--992--7851Chr01:41711825..41711849 (25 bp)
GGTATGATGGATGCCCTTGTCAAGA
LOC_Os01g71420
Os.13966.1.S1_x_at--217--5311Chr01:41711641..41711663 (23 bp)
GAAGGCAATTTTCGTTGGTCACAAC
LOC_Os01g71420
Os.13966.1.S1_x_at--564--8571Chr01:41711609..41711633 (25 bp)
TGGATTGGTGCTGCCCACACGAGAA
LOC_Os01g71420
Os.13966.1.S1_x_at--272--5551Chr01:41711587..41711611 (25 bp)
GAAACTCTGGCTATGTTTTGCCCGA
LOC_Os01g71420
Os.13966.1.S1_x_at--1066--2111Chr01:41711559..41711583 (25 bp)
ACAGGCTATGGTGGCTACGGTAACT
LOC_Os01g71420
Os.13966.1.S1_x_at--450--4551Chr01:41711497..41711521 (25 bp)
GCCCTTCTCAATTCAGTCATGGATA
LOC_Os01g71420
Os.13966.1.S1_x_at--605--1551Chr01:41711439..41711463 (25 bp)
AGCTTGAGCTCCTAGACTTGTAAAT
LOC_Os01g71420
Os.13966.1.S1_x_at--173--671Chr01:41711248..41711272 (25 bp)
ATGAACCTATGGGATCCACTGCCAC
LOC_Os01g71420
Os.13966.1.S1_x_at--144--7451Chr01:41711223..41711247 (25 bp)
GTGTCAAGCTACGTGGTGCCATGTC
LOC_Os01g71420
Os.13966.1.S1_x_at--156--4431Chr01:41711206..41711230 (25 bp)
GCCATGTCAGATGAAATCACCAGAA
LOC_Os01g71420
Target Sequence 
GAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTC
AAGAGGGCTTCAGTGAAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCT
ATGTTTTGCCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACANG
CCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAA
ATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAAT
TAAGCTGAGCCCCCTTNGTAAAATTGTAATATATGCGTACAGAGTAAGAAAAGGTTGGCAGAAAGAAAGAGAAAAGAGTA
GGAAAAATGATGAACCTATGGGATCCACTGCCACGTGTCAAGCTACGTGGTGCCATGTCAGATGAAATCACCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13966.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis