Browse Element(s) Details


OsAffx.22670.1.S1_x_at

Description tigr:9631.m05485
TID=OsAffx.22670.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 17, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5613011/11Glycosyl hydrolases family 17 protein
LOC_Os01g714741/11Lichenase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56090Os.18725.1.S1_at11/113+31891832..31893491Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g56100OsAffx.13502.1.S1_at11/113+31898552..31901922hypothetical protein
LOC_Os03g56100Os.55223.1.S1_at4/113+31898552..31901922hypothetical protein
LOC_Os03g56110Os.31463.1.S1_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.57551.1.S1_s_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.8575.1.S1_at1/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56120NANA3+31912989..31913459hypothetical protein
LOC_Os03g56130OsAffx.22670.1.S1_x_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_s_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56140Os.57551.1.S1_s_at2/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56140Os.8575.1.S1_at1/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56149Os.23167.2.S1_at2/113+31941717..31943382NA

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0031225cellular_componentanchored to membrane
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22670.1.S1_x_at--890--871Chr03:31919331..31919355 (25 bp)
AGGCCTACCCGATGATGTTATTCCG
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--748--731Chr03:31919345..31919369 (25 bp)
ATGTTATTCCGGTTCGTCATCGTGG
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--1070--3971Chr03:31919439..31919463 (25 bp)
CGGTGGCTGGTCTGGGACACATCAA
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--1--9311Chr03:31919513..31919537 (25 bp)
TCCGCCAGCGAGTTCACCGACGAGG
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--123--1652Chr03:31919519..31919543 (25 bp)
AGCGAGTTCACCGACGAGGCGAAGT
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--533--4051Chr03:31919533..31919557 (25 bp)
CGAGGCGAAGTCGTCGTTCCTGAGC
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--265--2851Chr03:31919540..31919564 (25 bp)
AAGTCGTCGTTCCTGAGCTACGTGA
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--884--1131Chr03:31919541..31919565 (25 bp)
AGTCGTCGTTCCTGAGCTACGTGAT
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--1107--9391Chr03:31919543..31919567 (25 bp)
TCGTCGTTCCTGAGCTACGTGATCC
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--925--9371Chr03:31919546..31919570 (25 bp)
TCGTTCCTGAGCTACGTGATCCCAT
LOC_Os03g56130
OsAffx.22670.1.S1_x_at--30--9911Chr03:31919624..31919648 (25 bp)
TACTCCTACAACCCGGGCGGCATGG
LOC_Os03g56130
Target Sequence 
AGGCCTACCCGATGATGTTATTCCGGTTCGTCATCGTGGGCAATGAGGTCGCCGGCGCCGACACGCAGCTCCTCGTCCCG
GCCATGGAGAACGTCCACGCCGCGCTCGCGGTGGCTGGTCTGGGACACATCAAGGTGACGACGTCGATCTCCCAGGCCAC
CATCGGAATCCACATCCCGCCATCCGCCAGCGAGTTCACCGACGAGGCGAAGTCGTCGTTCCTGAGCTACGTGATCCCAT
TCCTGGAATGGACGCACGCGCCGCTGCTGGCCAACCTGTACCCGTACTTCATCTACTCCTACAACCCGGGCGGCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22670.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis