Browse Element(s) Details


Os.18725.1.S1_at

Description gb:AK112018.1
DB_XREF= gi:37988681
TID=Os.18725.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C02, full insert sequence.
FL= gb:AK112018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5609011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56060Os.10855.1.S1_at11/113+31869482..31873355glycosyl transferase, group 2 family protein, expressed
LOC_Os03g56070Os.11015.1.S1_at9/113+31881522..31884082expressed protein
LOC_Os03g56080OsAffx.13501.1.S1_at11/113+31886081..31886530hypothetical protein
LOC_Os03g56090Os.18725.1.S1_at11/113+31891832..31893491Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g56100OsAffx.13502.1.S1_at11/113+31898552..31901922hypothetical protein
LOC_Os03g56100Os.55223.1.S1_at4/113+31898552..31901922hypothetical protein
LOC_Os03g56110Os.31463.1.S1_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.57551.1.S1_s_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.8575.1.S1_at1/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56120NANA3+31912989..31913459hypothetical protein
LOC_Os03g56130OsAffx.22670.1.S1_x_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_s_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18725.1.S1_at--847--3191Chr03:31892402..31892426 (25 bp)
CAATGTACGAGGAAGCCCCAAGCTT
LOC_Os03g56090
Os.18725.1.S1_at--185--5491Chr03:31892293..31892317 (25 bp)
GAACTTCCACTTCAACCATGTCAAG
LOC_Os03g56090
Os.18725.1.S1_at--150--7291Chr03:31892254..31892278 (25 bp)
GTGCCTCTTCGGGATGGGAGATCAC
LOC_Os03g56090
Os.18725.1.S1_at--351--8911Chr03:31892207..31892231 (25 bp)
TGAGCCCGTTGGTTTGCCCTAATAA
LOC_Os03g56090
Os.18725.1.S1_at--71--4731Chr03:31892127..31892151 (25 bp)
GCTGACCTCGGGATGCAGTAGCAAT
LOC_Os03g56090
Os.18725.1.S1_at--69--7931Chr03:31892100..31892124 (25 bp)
GGTTGTGTTTCCGTGTACATGCATG
LOC_Os03g56090
Os.18725.1.S1_at--134--1491Chr03:31892000..31892024 (25 bp)
AGCAATAAGGTCGAGCTCTCACCAC
LOC_Os03g56090
Os.18725.1.S1_at--486--1271Chr03:31891964..31891988 (25 bp)
AGATAGGTGCATGCCTGATTTTCCA
LOC_Os03g56090
Os.18725.1.S1_at--9--6551Chr03:31891948..31891972 (25 bp)
GATTTTCCAGGTGTCTTCATGTGAG
LOC_Os03g56090
Os.18725.1.S1_at--1123--811Chr03:31891911..31891935 (25 bp)
ATGGTATTTTCCTCTACTCTCTTAC
LOC_Os03g56090
Os.18725.1.S1_at--1157--3991Chr03:31891854..31891878 (25 bp)
CGTGTTGCATTTATCTGTCGCTTAA
LOC_Os03g56090
Target Sequence 
CAATGTACGAGGAAGCCCCAAGCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTGCTCC
AGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCTGGACGGGCTCGAGTGCCTCTTCGG
GATGGGAGATCACCAAAACATGAGATGGAATGAGGTGAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCC
AAGGGATGCAGCAGTACTGCCTANTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTGTAC
ATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAANGGGGAAAGATGAGATCAANCTTCTTTGAACTA
AGAGCAATAAGGTCGAGCTCTCACCACTCCTAGATGAGAGATAGGTGCATGCCTGATTTTCCAGGTGTCTTCATGTGAGT
CTAGTCTTTAAATGGTATTTTCCTCTACTCTCTTACTGCCCTACAGAAACATTTTACATTAGACTGTACGTGTTGCATTT
ATCTGTCGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis