Browse Element(s) Details


OsAffx.13502.1.S1_at

Description tigr:9631.m05481
TID=OsAffx.13502.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5610011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56070Os.11015.1.S1_at9/113+31881522..31884082expressed protein
LOC_Os03g56080OsAffx.13501.1.S1_at11/113+31886081..31886530hypothetical protein
LOC_Os03g56090Os.18725.1.S1_at11/113+31891832..31893491Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g56100OsAffx.13502.1.S1_at11/113+31898552..31901922hypothetical protein
LOC_Os03g56100Os.55223.1.S1_at4/113+31898552..31901922hypothetical protein
LOC_Os03g56110Os.31463.1.S1_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.57551.1.S1_s_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.8575.1.S1_at1/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56120NANA3+31912989..31913459hypothetical protein
LOC_Os03g56130OsAffx.22670.1.S1_x_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_s_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56140Os.57551.1.S1_s_at2/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56140Os.8575.1.S1_at1/113+31925643..31930528KNOX1 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13502.1.S1_at--147--6653Chr03:31901376..31901400 (25 bp)
GTTGAAATGCTATACCACGGGATAT
LOC_Os03g56100
OsAffx.13502.1.S1_at--822--231Chr03:31901397..31901421 (25 bp)
ATATACCGTCCCGAGCGCGTGGGAC
LOC_Os03g56100
OsAffx.13502.1.S1_at--539--9032Chr03:31901437..31901461 (25 bp)
TGCACTATCTCCTTGAGCCATGTCT
LOC_Os03g56100
OsAffx.13502.1.S1_at--1050--10751Chr03:31901449..31901473 (25 bp)
TTGAGCCATGTCTTTTCCGCGTGCG
LOC_Os03g56100
OsAffx.13502.1.S1_at--849--9291Chr03:31901464..31901488 (25 bp)
TCCGCGTGCGTCACTGCTGCTGATG
LOC_Os03g56100
OsAffx.13502.1.S1_at--954--711Chr03:31901486..31901510 (25 bp)
ATGATAGCTTCATGGTCGCGGTCAT
LOC_Os03g56100
OsAffx.13502.1.S1_at--1126--811Chr03:31901497..31901521 (25 bp)
ATGGTCGCGGTCATTGCCTGCTCGT
LOC_Os03g56100
OsAffx.13502.1.S1_at--805--5812Chr03:31901535..31901559 (25 bp)
GACCGCGCCGATGCGAACGCTTGAT
LOC_Os03g56100
OsAffx.13502.1.S1_at--1076--4032Chr03:31901543..31901567 (25 bp)
CGATGCGAACGCTTGATGATGATGT
LOC_Os03g56100
OsAffx.13502.1.S1_at--132--8111Chr03:31901633..31901657 (25 bp)
GGACGCGGCCGCTAACGATGAGCCC
LOC_Os03g56100
OsAffx.13502.1.S1_at--829--2211Chr03:31901787..31901811 (25 bp)
ACAAGCTCTGGCACGAGACGTGGAC
LOC_Os03g56100
Target Sequence 
GTTGAAATGCTATACCACGGGATATACCGTCCCGAGCGCGTGGGACGGTATCGCCTCCTCCTGCACTATCTCCTTGAGCC
ATGTCTTTTCCGCGTGCGTCACTGCTGCTGATGATAGCTTCATGGTCGCGGTCATTGCCTGCTCGTCGCTACCGCCTGTG
ACCGCGCCGATGCGAACGCTTGATGATGATGTGGGGATGTGGACGGTGGAGGACGCGGCCTCGGCGACGAGCTCCGGCAT
GAGGCATGGATGGTGGAGGACGCGGCCGCTAACGATGAGCCCGGCGTGGGGCGTGGCGGAGGAGGACGCGGCCACCGGCG
ACGAGCTCCGACGTGGAACGTGGATGGCGGAGGATGTGGCTGCGCCGGCGACGATCTCCGGCGTGGACCGTGGAGGATGC
CGCTGCCGGCGACAAGCTCTGGCACGAGACGTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis