Browse Element(s) Details


Os.2416.1.S1_a_at

Description gb:AB027428.1
DB_XREF= gi:4884525
TID=Os.2416.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.2416 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for beta 1,3-glucanase, complete cds, clone:E1149.
PROD=beta 1,3-glucanase
FL= gb:AB027428.1 gb:AK070677.1 gb:AK104862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7134011/11Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative, expressed
LOC_Os01g714002/11Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71330Os.53046.1.S1_at11/111+41670176..41671113expressed protein
LOC_Os01g71330Os.53046.1.S1_s_at11/111+41670176..41671113expressed protein
LOC_Os01g71340Os.2416.1.S1_a_at11/111+41673497..41675222Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative, expressed
LOC_Os01g71350Os.32115.1.S1_at11/111+41676580..41677967Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71360OsAffx.6133.2.A1_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71360Os.29856.1.S1_x_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2416.1.S1_a_at--910--8351Chr01:41674691..41674715 (25 bp)
GGCGGCAACGCGTACCAGAACCTGT
LOC_Os01g71340
Os.2416.1.S1_a_at--645--2791Chr01:41674889..41674913 (25 bp)
AAGAGGCCCGGGAGCATCGAGACCT
LOC_Os01g71340
Os.2416.1.S1_a_at--1028--4232Chr01:41674896..41674920 (25 bp)
CCGGGAGCATCGAGACCTACATTTT
LOC_Os01g71340
Os.2416.1.S1_a_at--1069--1392Chr01:41698679..41698703 (25 bp)
AGACGGAGAGGCACTTCGGCCTCTT
LOC_Os01g71400
Os.2416.1.S1_a_at--1088--4251Chr01:41674997..41675021 (25 bp)
CCGGCATACTCCATCAATTTCTAAG
LOC_Os01g71340
Os.2416.1.S1_a_at--421--6511Chr01:41675076..41675100 (25 bp)
GATATATACATACACGCGTTCCATA
LOC_Os01g71340
Os.2416.1.S1_a_at--730--331Chr01:41675085..41675109 (25 bp)
ATACACGCGTTCCATATATAGTTTG
LOC_Os01g71340
Os.2416.1.S1_a_at--78--7691Chr01:41675109..41675133 (25 bp)
GGGTTTGAATAAGCTTTCTGCCTGC
LOC_Os01g71340
Os.2416.1.S1_a_at--785--10591Chr01:41675124..41675148 (25 bp)
TTCTGCCTGCATATTGCAAAGCTCA
LOC_Os01g71340
Os.2416.1.S1_a_at--766--5131Chr01:41675139..41675163 (25 bp)
GCAAAGCTCAATGCATGCATGTAAC
LOC_Os01g71340
Os.2416.1.S1_a_at--663--4991Chr01:41675155..41675179 (25 bp)
GCATGTAACGGTGCAGAGACAAATA
LOC_Os01g71340
Target Sequence 
GGCGGCAACGCGTACCAGAACCTGTTCGACGCCATCGTCGACACGTTCTACTCCGCGCTGGAGAGCGCCGGCGCCGGGAG
CGTCCCGATCGTGGTGTCGGAGAGCGGGTGGCCGTCGGCCGGCGGCACGGCGGCGAGCGCCGGCAACGCGCAGACGTACA
ACCAGAACCTGATCAACCACGTCGGGCAGGGGACGCCCAAGAGGCCCGGGAGCATCGAGACCTACATTTTCGCCATGTTC
AACGAGAACCAGAAGGGAGGCGACGAGACGGAGAGGCACTTCGGCCTCTTCAACCCGGACCAGTCGCCGGCATACTCCAT
CAATTTCTAAGAAGATTGTTCTGAGAAGAGATCGATCGATGATGAATTAAACGTCGATCGATATAGATATATACATACAC
GCGTTCCATATATAGTTTGGGTTTGAATAAGCTTTCTGCCTGCATATTGCAAAGCTCAATGCATGCATGTAACGGTGCAG
AGACAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2416.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis