Browse Element(s) Details


OsAffx.24006.1.S1_at

Description gb:NM_189746.1
DB_XREF= gi:34906575
GEN=P0660F12.17
TID=OsAffx.24006.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative beta 1,3-glucanase (P0660F12.17), mRNA.
PROD=putative beta 1,3-glucanase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7140011/11Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g7165011/11Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71340Os.2416.1.S1_a_at11/111+41673497..41675222Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative, expressed
LOC_Os01g71350Os.32115.1.S1_at11/111+41676580..41677967Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71360OsAffx.6133.2.A1_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71360Os.29856.1.S1_x_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420Os.13966.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.13966.1.S1_x_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_x_at9/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430OsAffx.21885.3.S1_s_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71430OsAffx.21885.3.S1_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71440OsAffx.9679.1.S1_at11/111+41717794..41718948F-box domain containing protein
LOC_Os01g71450OsAffx.21885.2.S1_s_at11/111+41720313..41721146F-box domain containing protein
LOC_Os01g71460Os.36487.1.S1_at10/111+41721588..41723052F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24006.1.S1_at--309--3272Chr01:41852775..41852799 (25 bp)
CAACATCAAGGTGTCCGTGTCGGTG
LOC_Os01g71650
OsAffx.24006.1.S1_at--134--372Chr01:41852779..41852803 (25 bp)
ATCAAGGTGTCCGTGTCGGTGTCCC
LOC_Os01g71650
OsAffx.24006.1.S1_at--324--7752Chr01:41852796..41852820 (25 bp)
GGTGTCCCAGAAGGGCGTGCTCGCC
LOC_Os01g71650
OsAffx.24006.1.S1_at--184--7852Chr01:41852822..41852846 (25 bp)
GGTACCCGCCGTCCAATGGCATGTT
LOC_Os01g71650
OsAffx.24006.1.S1_at--250--2972Chr01:41852836..41852860 (25 bp)
AATGGCATGTTCTCCCCCGAAGCGA
LOC_Os01g71650
OsAffx.24006.1.S1_at--325--5412Chr01:41852854..41852878 (25 bp)
GAAGCGACCTCGTACATGACGCCCA
LOC_Os01g71650
OsAffx.24006.1.S1_at--660--7012Chr01:41852865..41852889 (25 bp)
GTACATGACGCCCATCGCGAAGTAC
LOC_Os01g71650
OsAffx.24006.1.S1_at--283--1832Chr01:41852872..41852896 (25 bp)
ACGCCCATCGCGAAGTACCTGGCGA
LOC_Os01g71650
OsAffx.24006.1.S1_at--213--2632Chr01:41852950..41852974 (25 bp)
AACCTGCGGGCCCAGATCGACGACA
LOC_Os01g71650
OsAffx.24006.1.S1_at--601--3952Chr01:41853014..41853038 (25 bp)
CGGACGGCAGCAAGGCTTACCAGAA
LOC_Os01g71650
OsAffx.24006.1.S1_at--543--5052Chr01:41853020..41853044 (25 bp)
GCAGCAAGGCTTACCAGAACCAGTT
LOC_Os01g71650
Target Sequence 
CAACATCAAGGTGTCCGTGTCGGTGTCCCAGAAGGGCGTGCTCGCCGGGTACCCGCCGTCCAATGGCATGTTCTCCCCCG
AAGCGACCTCGTACATGACGCCCATCGCGAAGTACCTGGCGAGCACCGGCGCGCCGCTGATGGCCAACGTCTACCCCTAC
TTCGCCTACGTGGGCAACCTGCGGGCCCAGATCGACGACATCAACTACGCGCTCTTCACGTCGCCGGGCACGGTGGTGCC
GGACGGCAGCAAGGCTTACCAGAACCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis