Browse Element(s) Details

Os.54192.1.S1_x_at

Description

gb:AK102443.1
DB_XREF= gi:32987652
TID=Os.54192.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093N14, full insert sequence.
FL= gb:AK102443.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g71420	9/11	calcineurin-like phosphoesterase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g71370	OsAffx.29536.5.S1_x_at	11/11	1	+	41689753..41690703	hypothetical protein
LOC_Os01g71380	Os.1385.2.S1_x_at	11/11	1	+	41692029..41693214	Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390	OsAffx.16205.1.S1_at	2/11	1	+	41694593..41695873	hypothetical protein
LOC_Os01g71400	OsAffx.24006.1.S1_at	11/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400	Os.2416.1.S1_a_at	2/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400	OsAffx.21878.1.S1_x_at	2/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400	OsAffx.21878.2.S1_x_at	1/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410	OsAffx.21887.1.S1_s_at	11/11	1	+	41702021..41703146	Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410	Os.1385.2.S1_x_at	1/11	1	+	41702021..41703146	Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420	Os.13966.1.S1_at	11/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420	Os.13966.1.S1_x_at	11/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420	Os.54192.1.S1_at	11/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420	Os.54192.1.S1_x_at	9/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430	OsAffx.21885.3.S1_s_at	11/11	1	+	41715784..41716923	F-box domain containing protein
LOC_Os01g71430	OsAffx.21885.3.S1_at	11/11	1	+	41715784..41716923	F-box domain containing protein
LOC_Os01g71440	OsAffx.9679.1.S1_at	11/11	1	+	41717794..41718948	F-box domain containing protein
LOC_Os01g71450	OsAffx.21885.2.S1_s_at	11/11	1	+	41720313..41721146	F-box domain containing protein
LOC_Os01g71460	Os.36487.1.S1_at	10/11	1	+	41721588..41723052	F-box domain containing protein, expressed
LOC_Os01g71474	OsAffx.24002.2.S1_s_at	11/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	Os.7551.1.S1_at	11/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	OsAffx.24002.1.S1_at	10/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	OsAffx.22670.1.S1_s_at	8/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	OsAffx.22670.1.S1_x_at	1/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71490	NA	NA	1	+	41730319..41731253	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0004722	molecular_function	protein serine/threonine phosphatase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54192.1.S1_x_at--991--785	1	Chr01:41711825..41711849 (25 bp)	GGTATGATGGATGCCCTTGTCAAGA	LOC_Os01g71420
Os.54192.1.S1_x_at--560--213	1	Chr01:41711753..41711777 (25 bp)	ACAGAATTTCTTATCCCCTGAATCC	LOC_Os01g71420
Os.54192.1.S1_x_at--276--525	1	Chr01:41711734..41711758 (25 bp)	GAATCCCTTCAGATAACTTAGATAC	LOC_Os01g71420
Os.54192.1.S1_x_at--784--959	1	Chr01:41711658..41711682 (25 bp)	TCATTGGTTGTCATTTTACAGGCAA	LOC_Os01g71420
Os.54192.1.S1_x_at--171--211	1	Chr01:41711641..41711665 (25 bp)	ACAGGCAATTTTCGTTGGTCACAAC	LOC_Os01g71420
Os.54192.1.S1_x_at--563--857	1	Chr01:41711609..41711633 (25 bp)	TGGATTGGTGCTGCCCACACGAGAA	LOC_Os01g71420
Os.54192.1.S1_x_at--228--255	1	NONE	AACTCTGGCTATGTTTTGTCCGACA	NONE
Os.54192.1.S1_x_at--759--1039	1	NONE	TTTTGTCCGACACACAGGCTATGGT	NONE
Os.54192.1.S1_x_at--1065--211	1	Chr01:41711559..41711583 (25 bp)	ACAGGCTATGGTGGCTACGGTAACT	LOC_Os01g71420
Os.54192.1.S1_x_at--57--167	1	Chr01:41711498..41711522 (25 bp)	AGCCCTTCTCAATTCAGTCATGGAT	LOC_Os01g71420
Os.54192.1.S1_x_at--604--155	1	Chr01:41711439..41711463 (25 bp)	AGCTTGAGCTCCTAGACTTGTAAAT	LOC_Os01g71420

Target Sequence

GGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGTTTGTTTCATCTGAACATTTCTTGACATGTATACAGAATT
TCTTATCCCCTGAATCCCTTCAGATAACTTAGATACACAGGTCAAAATTCAGAAGACACTTACTTTTTATTTGTTAGAGA
ACATATATCATTGGTTGTCATTTTACAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGA
AACTCTGGCTATGTTTTGTCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATA
TCTGAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTA
GACTTGTAAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis