Browse Element(s) Details


OsAffx.21887.1.S1_s_at

Description gb:NM_189718.1
DB_XREF= gi:34906519
GEN=P0432C03.17
TID=OsAffx.21887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative beta 1,3-glucanase (P0432C03.17), mRNA.
PROD=putative beta 1,3-glucanase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7141011/11Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71350Os.32115.1.S1_at11/111+41676580..41677967Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71360OsAffx.6133.2.A1_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71360Os.29856.1.S1_x_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420Os.13966.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.13966.1.S1_x_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_at11/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420Os.54192.1.S1_x_at9/111+41711188..41713266calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430OsAffx.21885.3.S1_s_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71430OsAffx.21885.3.S1_at11/111+41715784..41716923F-box domain containing protein
LOC_Os01g71440OsAffx.9679.1.S1_at11/111+41717794..41718948F-box domain containing protein
LOC_Os01g71450OsAffx.21885.2.S1_s_at11/111+41720313..41721146F-box domain containing protein
LOC_Os01g71460Os.36487.1.S1_at10/111+41721588..41723052F-box domain containing protein, expressed
LOC_Os01g71474OsAffx.24002.2.S1_s_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474Os.7551.1.S1_at11/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.24002.1.S1_at10/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_s_at8/111+41724663..41728442Lichenase II precursor, putative, expressed
LOC_Os01g71474OsAffx.22670.1.S1_x_at1/111+41724663..41728442Lichenase II precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21887.1.S1_s_at--292--8291Chr01:41702574..41702598 (25 bp)
GGCTTCGGCAAGATCAAGGTGTCCA
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--224--9731Chr01:41702587..41702611 (25 bp)
TCAAGGTGTCCACGGCCGTCAAGAT
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--175--7091Chr01:41702604..41702628 (25 bp)
GTCAAGATGGACGTGCTCGGCACCT
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--502--4151Chr01:41702681..41702705 (25 bp)
CGCGAAGTTCTTGGCGAGCAACGGC
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--448--5791Chr01:41702805..41702829 (25 bp)
GACGACGGACGGACATACAGCAACA
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--38--9871Chr01:41702820..41702844 (25 bp)
TACAGCAACATGTTCGCCGCGATGG
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--681--811Chr01:41702841..41702865 (25 bp)
ATGGTGGACGCCATGTACTCGGCGT
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--60--8151Chr01:41702948..41702972 (25 bp)
GGACAACGCGCGGAGGTACAACCAG
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--698--1071Chr01:41702971..41702995 (25 bp)
AGGGACTGATCGACCACGTTGGCAT
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--442--5011Chr01:41703012..41703036 (25 bp)
GCAGGCGCCATGGAGGCGTACATAT
LOC_Os01g71410
OsAffx.21887.1.S1_s_at--1011--6011Chr01:41703078..41703102 (25 bp)
GAGAGGCACTATGGGTTGTTCAACC
LOC_Os01g71410
Target Sequence 
GGCTTCGGCAAGATCAAGGTGTCCACGGCCGTCAAGATGGACGTGCTCGGCACCTCGTCGCCGCCCTCCGGCGGCGAGTT
CAGCGACGCCGCCGTCATGGCCCCCATCGCGAAGTTCTTGGCGAGCAACGGCTCGCCGCTGCTGGCCAACGTCTACCCCT
ACTTCGCCTACAAGGGCGGCGACGTCGACCTCAACTTCGCCCTCTTCCAGCCGACCACGGCGACGGTGGCCGACGACGGA
CGGACATACAGCAACATGTTCGCCGCGATGGTGGACGCCATGTACTCGGCGTTGGAGAAGGCCGGGGCGCCGGGGGTGGC
CGTCGTCGTGTCCGAGAGCGGGTGGCCGTCGGCCGGCGGCTCCGGCGCGAGCGCGGACAACGCGCGGAGGTACAACCAGG
GACTGATCGACCACGTTGGCATGGGCACGCCCAAGAGGGCAGGCGCCATGGAGGCGTACATATTCGCCATGTTCAACGAG
AACCAGAAGGACGGGGACGAGACGGAGAGGCACTATGGGTTGTTCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21887.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis