Browse Element(s) Details

OsAffx.21885.3.S1_s_at

Description

tigr:9629.m07064
TID=OsAffx.21885.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g71430	11/11	F-box domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g71380	Os.1385.2.S1_x_at	11/11	1	+	41692029..41693214	Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390	OsAffx.16205.1.S1_at	2/11	1	+	41694593..41695873	hypothetical protein
LOC_Os01g71400	OsAffx.24006.1.S1_at	11/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400	Os.2416.1.S1_a_at	2/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400	OsAffx.21878.1.S1_x_at	2/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400	OsAffx.21878.2.S1_x_at	1/11	1	+	41697564..41698743	Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410	OsAffx.21887.1.S1_s_at	11/11	1	+	41702021..41703146	Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410	Os.1385.2.S1_x_at	1/11	1	+	41702021..41703146	Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71420	Os.13966.1.S1_at	11/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420	Os.13966.1.S1_x_at	11/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420	Os.54192.1.S1_at	11/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71420	Os.54192.1.S1_x_at	9/11	1	+	41711188..41713266	calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g71430	OsAffx.21885.3.S1_s_at	11/11	1	+	41715784..41716923	F-box domain containing protein
LOC_Os01g71430	OsAffx.21885.3.S1_at	11/11	1	+	41715784..41716923	F-box domain containing protein
LOC_Os01g71440	OsAffx.9679.1.S1_at	11/11	1	+	41717794..41718948	F-box domain containing protein
LOC_Os01g71450	OsAffx.21885.2.S1_s_at	11/11	1	+	41720313..41721146	F-box domain containing protein
LOC_Os01g71460	Os.36487.1.S1_at	10/11	1	+	41721588..41723052	F-box domain containing protein, expressed
LOC_Os01g71474	OsAffx.24002.2.S1_s_at	11/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	Os.7551.1.S1_at	11/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	OsAffx.24002.1.S1_at	10/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	OsAffx.22670.1.S1_s_at	8/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71474	OsAffx.22670.1.S1_x_at	1/11	1	+	41724663..41728442	Lichenase II precursor, putative, expressed
LOC_Os01g71490	NA	NA	1	+	41730319..41731253	hypothetical protein
LOC_Os01g71510	NA	NA	1	+	41738343..41741570	transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.21885.3.S1_s_at--433--193	1	Chr01:41716353..41716377 (25 bp)	ACGGCGCTGTGGTTCCCGAAATGGA	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--308--791	1	Chr01:41716343..41716367 (25 bp)	GGTTCCCGAAATGGATGCAGCACAA	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--487--65	1	Chr01:41716329..41716353 (25 bp)	ATGCAGCACAAGTACGTCGACGTCG	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--101--577	1	Chr01:41716311..41716335 (25 bp)	GACGTCGTCTACCACAAGGGCGCGT	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--72--941	1	Chr01:41716307..41716331 (25 bp)	TCGTCTACCACAAGGGCGCGTTCTA	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--645--1057	1	Chr01:41716287..41716311 (25 bp)	TTCTACACGGCGAGCCGCGAGGCCG	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--592--963	1	Chr01:41716139..41716163 (25 bp)	TCATGGTGAGCAGCGTCGGCGCCAT	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--18--811	1	Chr01:41716114..41716138 (25 bp)	GGACGACGAAGACCATGCGCGACAC	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--496--841	1	Chr01:41715908..41715932 (25 bp)	GGCCGTTCGTGTCCTTCGAGTACTA	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--40--1063	1	Chr01:41715894..41715918 (25 bp)	TTCGAGTACTACGACGGGCATCCTC	LOC_Os01g71430
OsAffx.21885.3.S1_s_at--823--759	1	Chr01:41715879..41715903 (25 bp)	GGGCATCCTCGGGAGTATCGCCTGC	LOC_Os01g71430

Target Sequence

ACGGCGCTGTGGTTCCCGAAATGGATGCAGCACAAGTACGTCGACGTCGTCTACCACAAGGGCGCGTTCTACACGGCGAG
CCGCGAGGCCGCGGTGACCGCCTGGGCGCCGGACGCGAGCTCGAGCGGCCTGCACGCGACGCGCGTCACGGAGCCGAGGC
CGGAGAAGTGCACGTGGGCCGCACTCGTGGAGTCGCTCGGCGGCGGCGACCTGCTCATGGTGAGCAGCGTCGGCGCCATG
GACGACGAAGACCATGCGCGACACGGCTACCTCCGCGGGTCCCGGCGGTACGAGGTGTCCCGCTACGAGGAGCGCGAGGA
GGGGAGGTGGCTCCCCGTGGAGGATCTCGGCGAGGTGGCCATCCTGGTGGGGATCGGCGGCCGCAGCCTGTGCGTGTCGA
CGCGAGGCGGCCGTGACGCGCTGCGCAACCACCTCTACTTCGCTCGGCCGTTCGTGTCCTTCGAGTACTACGACGGGCAT
CCTCGGGAGTATCGCCTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis