Browse Element(s) Details


OsAffx.24004.1.S1_at

Description tigr:9629.m07081
TID=OsAffx.24004.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7154910/11hypothetical protein
LOC_Os01g7159910/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71530OsAffx.22947.1.S1_x_at11/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.3.S1_x_at5/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.2.S1_x_at3/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71530OsAffx.22947.5.S1_x_at1/111+41751807..41758172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g71540Os.6747.1.S1_a_at11/111+41766154..41774373expressed protein
LOC_Os01g71540Os.23761.1.S1_at1/111+41766154..41774373expressed protein
LOC_Os01g71549OsAffx.24004.1.S1_at10/111+41776407..41778267hypothetical protein
LOC_Os01g71558Os.26710.1.S1_at2/111+41781225..41781890hypothetical protein
LOC_Os01g71570OsAffx.24002.2.S1_s_at8/111+41784119..41786745hypothetical protein
LOC_Os01g71570OsAffx.24002.1.S1_at4/111+41784119..41786745hypothetical protein
LOC_Os01g71590Os.6747.1.S1_a_at11/111+41797132..41805170expressed protein
LOC_Os01g71590Os.23761.1.S1_at1/111+41797132..41805170expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24004.1.S1_at--873--9751Chr11:8325346..8325537 (25 bp)
TAATGTGCAAACAGCCGTCGTCACC
NONE
OsAffx.24004.1.S1_at--359--7112Chr01:41808769..41808793 (25 bp)
GTCACCATACCTTGCCATAGTTTGT
LOC_Os01g71599
OsAffx.24004.1.S1_at--920--4432Chr01:41808756..41808780 (25 bp)
GCCATAGTTTGTGCCTTGCTGCCGT
LOC_Os01g71599
OsAffx.24004.1.S1_at--365--7232Chr01:41808730..41808754 (25 bp)
GTCGCCGTACTTTGCCATAGCCCAT
LOC_Os01g71599
OsAffx.24004.1.S1_at--773--7192Chr01:41808695..41808719 (25 bp)
GTCGTGGCTTTGGTGCCCAAGCTGC
LOC_Os01g71599
OsAffx.24004.1.S1_at--75--6012Chr01:41808600..41808624 (25 bp)
GAGAGTAGCGTTGTACTGCCGAAGA
LOC_Os01g71599
OsAffx.24004.1.S1_at--1092--2772Chr01:41808579..41808603 (25 bp)
AAGAGGGCCACGACCGGATCCACCT
LOC_Os01g71599
OsAffx.24004.1.S1_at--725--7972Chr01:41808564..41808588 (25 bp)
GGATCCACCTGGAAAGTCGAGGGAA
LOC_Os01g71599
OsAffx.24004.1.S1_at--986--1072Chr01:41808545..41808569 (25 bp)
AGGGAATCGGACTTGGGATCGCATC
LOC_Os01g71599
OsAffx.24004.1.S1_at--930--5672Chr01:41808536..41808560 (25 bp)
GACTTGGGATCGCATCAGGCATAGA
LOC_Os01g71599
OsAffx.24004.1.S1_at--703--6252Chr01:41807608..41807632 (25 bp)
GATGGTGCTGCATGCAAAGCGCAAA
LOC_Os01g71599
Target Sequence 
TAATGTGCAAACAGCCGTCGTCACCATACCTTGCCATAGTTTGTGCCTTGCTGCCGTCGTCGCCGTACTTTGCCATAGCC
CATGCCTTCCGCCGTCGTGGCTTTGGTGCCCAAGCTGCTGCTCTTGCTCTCCCCATCCTGGCACCGAGGGGAGGTGAGCG
GCATGGAGAACGGGTGAGGAAGACAGTGGAGAGTAGCGTTGTACTGCCGAAGAGGGCCACGACCGGATCCACCTGGAAAG
TCGAGGGAATCGGACTTGGGATCGCATCAGGCATAGAGGATAGGTTGTATCGAGAAGTATGGACTTACTGGTTATTAGTA
GAACTAGATGGTGATGGTGCTGCATGCAAAGCGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis