Browse Element(s) Details


Os.42832.1.S1_at

Description gb:NM_189750.1
DB_XREF= gi:34906583
GEN=P0660F12.22
TID=Os.42832.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis RecA-like protein (P0660F12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis RecA-like protein (P0660F12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7169010/11recA protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0009432biological_processSOS response
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0003677molecular_functionDNA binding
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42832.1.S1_at--288--10611Chr01:41870436..41870460 (25 bp)
TTCTGTTGCCGAAGCCATTGGTGTA
LOC_Os01g71690
Os.42832.1.S1_at--524--8971Chr01:41870406..41870430 (25 bp)
TGAAAAGCTCCTGATAGCCCAACCT
LOC_Os01g71690
Os.42832.1.S1_at--360--1771Chr01:41870385..41870409 (25 bp)
ACCTGACTCTGCTGAAAATTCTTTG
LOC_Os01g71690
Os.42832.1.S1_at--421--3571Chr01:41870358..41870382 (25 bp)
CATAGTGAACACTCTTGTTGGTGGA
LOC_Os01g71690
Os.42832.1.S1_at--52--6511Chr01:41870312..41870336 (25 bp)
GATAGTGTATGTTTCTTCCGCAATG
LOC_Os01g71690
Os.42832.1.S1_at--559--3051Chr01:41869763..41869787 (25 bp)
AATCAGACTCCTGGAATCTTCAAGG
LOC_Os01g71690
Os.42832.1.S1_at--625--3591Chr01:41869717..41869741 (25 bp)
CATTAGGATTCTATGCTGCAGTCAG
LOC_Os01g71690
Os.42832.1.S1_at--326--151Chr01:41869673..41869695 (23 bp)
ATTACGCTACAATGAGGCCCAGGCT
LOC_Os01g71690
Os.42832.1.S1_at--31--4351Chr01:41869509..41869532 (24 bp)
CCAGGCTACTGGCATCGGTATATCA
LOC_Os01g71690
Os.42832.1.S1_at--683--3131Chr01:41869465..41869489 (25 bp)
AATTAGCTCCAGCAACTCTGAAGGA
LOC_Os01g71690
Os.42832.1.S1_at--339--6871NONE
GTATTGGATCAATGCCTGTTGTAAT
NONE
Target Sequence 
TTCTGTTGCCGAAGCCATTGGTGTAAACGTTGAAAAGCTCCTGATAGCCCAACCTGACTCTGCTGAAAATTCTTTGAGCA
TAGTGAACACTCTTGTTGGTGGATCAATTGATGTTGTTGTTGTCGATAGTGTATGTTTCTTCCGCAATGTTAGAACAAAG
TTGAGCTCAAATCAGACTCCTGGAATCTTCAAGGAGGTAGCTTGTGGCGGCAATGCATTAGGATTCTATGCTGCAGTCAG
AATGAGGACTTCAAGAAGGGAATTACGCTACAATGAGGCCCAGGCTACTGGCATCGGTATATCAGTGCAGATAATCAAGA
ACAAATTAGCTCCAGCAACTCTGAAGGAAGCTGGCATTGACATCAGATTTGGGAAGGGGATCTGCTACGAATCAGAGATC
CTGGAGCTGGCTTCTTCCCTTGGGGTTATTATGAAGGATGATTCTGGGTATTGGATCAATGCCTGTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis