Browse Element(s) Details


Os.18689.1.S1_at

Description gb:AU031682
DB_XREF= gi:3767655
DB_XREF=AU031682
CLONE=R0503_6Z
TID=Os.18689.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU031682(R0503)~similar to GABA permease~unknown protein (P0660F12.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7174011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18689.1.S1_at--40--9531Chr01:41891353..41891377 (25 bp)
TCTCACGGTGAATTCTAAGTCCATT
LOC_Os01g71740
Os.18689.1.S1_at--539--9011Chr01:41891345..41891369 (25 bp)
TGAATTCTAAGTCCATTGCTGCTGC
LOC_Os01g71740
Os.18689.1.S1_at--891--3871Chr01:41891315..41891339 (25 bp)
CTGTAAATTTCTCGAGCTGCTCTGA
LOC_Os01g71740
Os.18689.1.S1_at--1051--4071Chr01:41891303..41891327 (25 bp)
CGAGCTGCTCTGATTTGGTTGTTTT
LOC_Os01g71740
Os.18689.1.S1_at--479--3491Chr01:41891244..41891268 (25 bp)
CAGGCGATGGTGTCGGTCACCACGC
LOC_Os01g71740
Os.18689.1.S1_at--310--8271Chr01:41891147..41891171 (25 bp)
GGCAGTTTCACCTCGGGCGATATGG
LOC_Os01g71740
Os.18689.1.S1_at--514--1751Chr01:41891138..41891162 (25 bp)
ACCTCGGGCGATATGGGCTCATGGT
LOC_Os01g71740
Os.18689.1.S1_at--116--7491Chr01:41890978..41891002 (25 bp)
GTGGGTGTTCCATGCCCGCTTCTGG
LOC_Os01g71740
Os.18689.1.S1_at--153--8751Chr01:41890903..41890927 (25 bp)
TGTAAATTTGAACGCGCGTACCCTG
LOC_Os01g71740
Os.18689.1.S1_at--845--1791Chr01:41890892..41890916 (25 bp)
ACGCGCGTACCCTGATTTGATAAAT
LOC_Os01g71740
Os.18689.1.S1_at--697--8971Chr01:41890860..41890884 (25 bp)
TGAAGCGTATTTGGGTTTGACCACG
LOC_Os01g71740
Target Sequence 
TCTCACGGTGAATTCTAAGTCCATTGCTGCTGCTGCTGCTGTAAATTTCTCGAGCTGCTCTGATTTGGTTGTTTTCTCAT
GGCAGTCGNTGGGGAGCCAGGTGGCGTTNCAGGCGATGGTGTCGGTCACCACGCTGGGGCTGTACATCGCGTACGNGCTG
CCGGTGTTTTTCCGCGTGACGACGGCTCGGAAGTCGTTTGTTCCGGGGCAGTTTCACCTCGGGCGATATGGGCTCATGGT
CGGCTGGATGGCCGTGGTCTGGGTGGCCACCGTCACGGTGCTCTTCTCGCTGCCGGTGGCGTACCCGGTGGCCAAGGAGA
CGTTCAACTACACGCCGGTGGCCGTCGGTGGCGTGCTGCTGCTCAGCCTNGTCGCGTGGGTGTTCCATGCCCGCTTCTGG
TTCCAAGGGCCTGTCACCAACGTTGACGCGTAAAACGTNCCCTGAATTTTTGTAAATTTGAACGCGCGTACCCTGATTTG
ATAAATTTCAATTTGAAGCGTATTTGGGTTTGACCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis