Browse Element(s) Details


OsAffx.24007.1.S1_at

Description tigr:9629.m07096
TID=OsAffx.24007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7175011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24007.1.S1_at--42--8991Chr01:41894367..41894391 (25 bp)
TGCAATCCTTTTGCCAAGGTGGCTT
LOC_Os01g71750
OsAffx.24007.1.S1_at--230--6251Chr01:41894337..41894361 (25 bp)
GATGGGCGAATGCAAACTTTCAGCT
LOC_Os01g71750
OsAffx.24007.1.S1_at--714--5131Chr01:41894326..41894350 (25 bp)
GCAAACTTTCAGCTAGCATGGACAA
LOC_Os01g71750
OsAffx.24007.1.S1_at--285--5011Chr01:41894311..41894335 (25 bp)
GCATGGACAACTACGTTGGCGCCAA
LOC_Os01g71750
OsAffx.24007.1.S1_at--622--6611Chr01:41894297..41894321 (25 bp)
GTTGGCGCCAAGACCAGTCACACAT
LOC_Os01g71750
OsAffx.24007.1.S1_at--464--2771Chr01:41894288..41894312 (25 bp)
AAGACCAGTCACACATGCTTAATTT
LOC_Os01g71750
OsAffx.24007.1.S1_at--561--2011Chr01:41894251..41894270 (20 bp)
ACTCTCTATGACCATCAAGGTGCAG
LOC_Os01g71750
OsAffx.24007.1.S1_at--498--2251Chr01:41894147..41894171 (25 bp)
AAATTTCTTCATGTGGATGGCATCA
LOC_Os01g71750
OsAffx.24007.1.S1_at--966--7512Chr06:12068540..12068604 (25 bp)
GTGGATGGCATCATCTTCATTATTC
NONE
OsAffx.24007.1.S1_at--837--4971Chr01:41894076..41894100 (25 bp)
GCATCGTGTTTCACTTGTTTTTACA
LOC_Os01g71750
OsAffx.24007.1.S1_at--264--831Chr01:41894052..41894076 (25 bp)
ATGGACTCAATTGCTATGTGGCACC
LOC_Os01g71750
Target Sequence 
TGCAATCCTTTTGCCAAGGTGGCTTTCAGAGATGGGCGAATGCAAACTTTCAGCTAGCATGGACAACTACGTTGGCGCCA
AGACCAGTCACACATGCTTAATTTGGGTGCACCGTGCACCTACTCTCTATGACCATCAAGGTGCAGAGAAATGCAAGGCC
AACAAGAAATTTCTTCATGTGGATGGCATCATCTTCATTATTCTTAAGAGTAAATTGTACTTTGCACTATGTAAATTGCA
TCGTGTTTCACTTGTTTTTACATGGACTCAATTGCTATGTGGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis