Browse Element(s) Details

Os.8935.1.S1_at

Description

gb:AK072850.1
DB_XREF= gi:32982873
TID=Os.8935.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding like protein (P0660F12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143E01, full insert sequence.
FL= gb:AK072850.1 gb:AK060921.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g71770	11/11	RNA-binding like protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g71700	OsAffx.11817.1.S1_x_at	11/11	1	+	41875965..41877872	amino acid permease family protein, putative
LOC_Os01g71700	OsAffx.11817.1.S1_at	11/11	1	+	41875965..41877872	amino acid permease family protein, putative
LOC_Os01g71700	OsAffx.11817.2.S1_x_at	1/11	1	+	41875965..41877872	amino acid permease family protein, putative
LOC_Os01g71700	OsAffx.11817.3.S1_x_at	1/11	1	+	41875965..41877872	amino acid permease family protein, putative
LOC_Os01g71710	OsAffx.11817.3.S1_at	11/11	1	+	41878886..41881353	Amino acid permease family protein
LOC_Os01g71710	OsAffx.11817.3.S1_x_at	11/11	1	+	41878886..41881353	Amino acid permease family protein
LOC_Os01g71710	OsAffx.11817.1.S1_x_at	1/11	1	+	41878886..41881353	Amino acid permease family protein
LOC_Os01g71720	Os.34273.1.S1_at	11/11	1	+	41881733..41886188	Amino acid permease family protein, expressed
LOC_Os01g71720	Os.34273.2.S1_x_at	11/11	1	+	41881733..41886188	Amino acid permease family protein, expressed
LOC_Os01g71720	Os.8825.2.S1_x_at	1/11	1	+	41881733..41886188	Amino acid permease family protein, expressed
LOC_Os01g71720	OsAffx.11817.2.S1_x_at	1/11	1	+	41881733..41886188	Amino acid permease family protein, expressed
LOC_Os01g71740	Os.18689.1.S1_at	11/11	1	+	41890831..41893436	Amino acid permease family protein, expressed
LOC_Os01g71740	OsAffx.11817.2.S1_x_at	7/11	1	+	41890831..41893436	Amino acid permease family protein, expressed
LOC_Os01g71740	OsAffx.11817.1.S1_x_at	1/11	1	+	41890831..41893436	Amino acid permease family protein, expressed
LOC_Os01g71750	OsAffx.24007.1.S1_at	11/11	1	+	41894022..41894426	hypothetical protein
LOC_Os01g71760	OsAffx.11817.2.S1_x_at	11/11	1	+	41897599..41900156	amino acid permease family protein, putative
LOC_Os01g71760	OsAffx.11817.1.S1_x_at	1/11	1	+	41897599..41900156	amino acid permease family protein, putative
LOC_Os01g71770	Os.8935.1.S1_at	11/11	1	+	41900757..41905683	RNA-binding like protein, putative, expressed
LOC_Os01g71770	Os.8935.2.S1_x_at	11/11	1	+	41900757..41905683	RNA-binding like protein, putative, expressed
LOC_Os01g71770	Os.54957.1.S1_at	1/11	1	+	41900757..41905683	RNA-binding like protein, putative, expressed
LOC_Os01g71780	Os.33738.1.S1_at	11/11	1	+	41909073..41910780	transducin family protein, putative, expressed
LOC_Os01g71790	Os.34520.1.S1_at	11/11	1	+	41911216..41912136	expressed protein
LOC_Os01g71800	OsAffx.21875.1.S1_at	11/11	1	+	41912754..41913912	Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810	Os.18664.2.S1_x_at	11/11	1	+	41919078..41921730	Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810	Os.18664.1.S1_a_at	11/11	1	+	41919078..41921730	Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810	Os.18664.1.S1_x_at	5/11	1	+	41919078..41921730	Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810	OsAffx.29203.1.S1_x_at	3/11	1	+	41919078..41921730	Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820	Os.18664.1.S1_x_at	11/11	1	+	41924132..41925538	Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820	Os.18664.1.S1_a_at	11/11	1	+	41924132..41925538	Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820	Os.18664.2.S1_x_at	8/11	1	+	41924132..41925538	Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71830	Os.18664.2.S1_x_at	4/11	1	+	41930154..41931501	Glucan endo-1,3-beta-glucosidase GV, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8935.1.S1_at--1025--995	1	Chr01:41901122..41901146 (25 bp)	TACCGACCTTACTGAGCCTGCTGTC	LOC_Os01g71770
Os.8935.1.S1_at--1158--167	1	Chr01:41901108..41901132 (25 bp)	AGCCTGCTGTCTTGTTACTGTTAAT	LOC_Os01g71770
Os.8935.1.S1_at--511--871	1	Chr01:41901006..41901030 (25 bp)	TGTTAATCTTAAGCGGGACGGGACA	LOC_Os01g71770
Os.8935.1.S1_at--384--575	1	Chr01:41900990..41901014 (25 bp)	GACGGGACATACGTGGAATCTGTAT	LOC_Os01g71770
Os.8935.1.S1_at--454--61	1	Chr01:41900921..41900945 (25 bp)	ATGCGGTTTCTGTGCCAGGATGCCA	LOC_Os01g71770
Os.8935.1.S1_at--297--389	1	Chr01:41900912..41900936 (25 bp)	CTGTGCCAGGATGCCATGAGATCGA	LOC_Os01g71770
Os.8935.1.S1_at--435--51	1	Chr01:41900892..41900916 (25 bp)	ATCGAGGCAGCAGTGTAGTTATCAT	LOC_Os01g71770
Os.8935.1.S1_at--748--223	1	Chr01:41900842..41900866 (25 bp)	ACAATCTTTCTTCTACACATGTAAA	LOC_Os01g71770
Os.8935.1.S1_at--574--773	1	Chr01:41900816..41900840 (25 bp)	GGTGGTTCTGGTTTTTGAGCCTCTC	LOC_Os01g71770
Os.8935.1.S1_at--361--919	1	Chr01:41900790..41900814 (25 bp)	TGCCTGATCCTGCTTTCTTGTCTGA	LOC_Os01g71770
Os.8935.1.S1_at--1121--715	1	Chr01:41900771..41900795 (25 bp)	GTCTGAATCCATCTACTACTGTATT	LOC_Os01g71770

Target Sequence

TACCGACCTTACTGAGCCTGCTGTCTTGTTACTGTTAATGATGTTTTAGTTTACCTCCAAGGGAACTGTGGAAACGGAGA
AAAGAACAACTCCATAAAGAATGCCAGGTTGTACTATGTTAATCTTAAGCGGGACGGGACATACGTGGAATCTGTATTTC
AGTTCATCCTGTAAATTTTTCTTTGCCATTAGAACGCATTNATGCGGTTTCTGTGCCAGGATGCCATGAGATCGAGGCAG
CAGTGTAGTTATCATTATTGTGGAAGTACCATATGTAATAACAATCTTTCTTCTACACATGTAAACGGTGGTTCTGGTTT
TTGAGCCTCTCGTGCCTGATCCTGCTTTCTTGTCTGAATCCATCTACTACTGTATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis