Browse Element(s) Details


Os.34273.2.S1_x_at

Description gb:NM_189754.1
DB_XREF= gi:34906591
GEN=P0660F12.26
TID=Os.34273.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU031682(R0503)~similar to GABA permease~unknown protein (P0660F12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU031682(R0503)~similar to GABA permease~unknown protein (P0660F12.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7172011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34273.2.S1_x_at--553--6371Chr01:41882717..41882741 (25 bp)
GATCCTCTGCTTGGGAGTCGTCGCT
LOC_Os01g71720
Os.34273.2.S1_x_at--689--6231Chr01:41882544..41882568 (25 bp)
GATGGCGTATGCGTTCTCCAGGGAC
LOC_Os01g71720
Os.34273.2.S1_x_at--84--1471Chr01:41882517..41882541 (25 bp)
AGCAATGCCGTTCTCGAAAGTCTGG
LOC_Os01g71720
Os.34273.2.S1_x_at--1016--1851Chr01:41882476..41882500 (25 bp)
AAGAGGTGCCTATAAACGCCGTATG
LOC_Os01g71720
Os.34273.2.S1_x_at--406--1831Chr01:41882461..41882485 (25 bp)
ACGCCGTATGGCTCTCTGTGGTGGT
LOC_Os01g71720
Os.34273.2.S1_x_at--1159--7531Chr01:41882439..41882462 (24 bp)
GTGGCGTTCATCATGGCTCTGACAT
LOC_Os01g71720
Os.34273.2.S1_x_at--1000--2651Chr01:41882319..41882343 (25 bp)
AAGCCAGGTGGCATTCCAAGCAATG
LOC_Os01g71720
Os.34273.2.S1_x_at--707--2731Chr01:41882302..41882326 (25 bp)
AAGCAATGGTGTCCATCGCGACGAT
LOC_Os01g71720
Os.34273.2.S1_x_at--309--531Chr01:41882288..41882312 (25 bp)
ATCGCGACGATAGGGCTCTGCATCT
LOC_Os01g71720
Os.34273.2.S1_x_at--148--431Chr01:41882249..41882273 (25 bp)
ATCTTCTTCCGGGTGACGACGGCGA
LOC_Os01g71720
Os.34273.2.S1_x_at--374--9671Chr01:41882199..41882223 (25 bp)
TCACCTTGGCAAGTACGGGATCGTC
LOC_Os01g71720
Target Sequence 
GATCCTCTGCTTGGGAGTCGTCGCTGTCGCCGTCTTCCTCTGCGGCCTCGCCTGCATCACTAGCAACTCGAGGATGGCGT
ATGCGTTCTCCAGGGACGGAGCAATGCCGTTCTCGAAAGTCTGGCACCGAGTGAACAAGCAAGAGGTGCCTATAAACGCC
GTATGGCTCTCTGTGGTGGTGGCGTTCATCATGGCTCTGACATCGCTGGGAAGCCAGGTGGCATTCCAAGCAATGGTGTC
CATCGCGACGATAGGGCTCTGCATCTCCTACGCGCTGCCGATCTTCTTCCGGGTGACGACGGCGAGGGGATCCTTCGTTC
CGGGGCCGTTTCACCTTGGCAAGTACGGGATCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34273.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis