Browse Element(s) Details


Os.18664.1.S1_x_at

Description gb:AK104139.1
DB_XREF= gi:32989348
TID=Os.18664.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucan endo-1,3-beta-D-glucosidase (P0614D08.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-C05, full insert sequence.
FL= gb:AK104321.1 gb:AK119902.1 gb:AK071109.1 gb:AK104139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7182011/11Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g718105/11Glucan endo-1,3-beta-glucosidase GV, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_x_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_a_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.2.S1_x_at8/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71830Os.18664.2.S1_x_at4/111+41930154..41931501Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71840OsAffx.28220.1.S1_s_at10/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71840Os.44572.1.S1_x_at9/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71850OsAffx.26147.4.S1_s_at11/111+41948403..41953595transposon protein, putative, unclassified
LOC_Os01g71850OsAffx.26147.2.S1_x_at11/111+41948403..41953595transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0031225cellular_componentanchored to membrane
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18664.1.S1_x_at--344--5451Chr01:41924269..41924293 (25 bp)
GAACTAGCGGCTGACCATGCCAGTG
LOC_Os01g71820
Os.18664.1.S1_x_at--914--9991Chr01:41924265..41924289 (25 bp)
TAGCGGCTGACCATGCCAGTGCAAA
LOC_Os01g71820
Os.18664.1.S1_x_at--1013--4691Chr01:41924263..41924287 (25 bp)
GCGGCTGACCATGCCAGTGCAAATA
LOC_Os01g71820
Os.18664.1.S1_x_at--611--8331Chr01:41924261..41924285 (25 bp)
GGCTGACCATGCCAGTGCAAATAAG
LOC_Os01g71820
Os.18664.1.S1_x_at--706--3851Chr01:41924259..41924283 (25 bp)
CTGACCATGCCAGTGCAAATAAGGA
LOC_Os01g71820
Os.18664.1.S1_x_at--127--7352Chr01:41924247..41924271 (25 bp)
GTGCAAATAAGGATTTCCAGAGACG
LOC_Os01g71820
Os.18664.1.S1_x_at--119--6632Chr01:41924201..41924225 (25 bp)
GTTGGTTGAACGTTAATGCATGTAC
LOC_Os01g71820
Os.18664.1.S1_x_at--639--5452Chr01:41924194..41924218 (25 bp)
GAACGTTAATGCATGTACTCTGTAT
LOC_Os01g71820
Os.18664.1.S1_x_at--662--1892Chr01:41924192..41924216 (25 bp)
ACGTTAATGCATGTACTCTGTATGG
LOC_Os01g71820
Os.18664.1.S1_x_at--499--8752Chr01:41924181..41924205 (25 bp)
TGTACTCTGTATGGCCCTTTTTTTT
LOC_Os01g71820
Os.18664.1.S1_x_at--1090--10351Chr01:41924160..41924184 (25 bp)
TTTTTGTGACAATGCTACATGAATA
LOC_Os01g71820
Target Sequence 
GAACTAGCGGCTGACCATGCCAGTGCAAATAAGGATTTCCAGAGACGAATAATCCATGATTAAATAATGTTGGTTGAACG
TTAATGCATGTACTCTGTATGGCCCTTTTTTTTTGTGACAATGCTACATGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18664.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis