Browse Element(s) Details


OsAffx.26147.2.S1_x_at

Description tigr:9629.m07106
TID=OsAffx.26147.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2569011/11transposon protein, putative, unclassified
LOC_Os01g7185011/11transposon protein, putative, unclassified
LOC_Os04g446309/11transposon protein, putative, unclassified
LOC_Os07g012709/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25670OsAffx.13974.1.S1_at11/114+14862328..14863421hypothetical protein
LOC_Os04g25670OsAffx.29642.1.S1_at1/114+14862328..14863421hypothetical protein
LOC_Os04g25680OsAffx.28220.1.S1_s_at8/114+14866544..14874150Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g25680Os.44572.1.S1_x_at7/114+14866544..14874150Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g25690OsAffx.26147.2.S1_x_at11/114+14874503..14875928transposon protein, putative, unclassified
LOC_Os04g25700Os.26886.6.S1_s_at9/114+14881274..14882507hypothetical protein
LOC_Os04g25700Os.26886.2.S1_s_at8/114+14881274..14882507hypothetical protein
LOC_Os04g25700OsAffx.16467.1.S1_at6/114+14881274..14882507hypothetical protein
LOC_Os04g25710NANA4+14882706..14884523transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25720OsAffx.26148.1.S1_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25720OsAffx.26148.1.S1_x_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25730Os.26886.3.S1_x_at6/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25730Os.26886.1.S1_x_at4/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26147.2.S1_x_at--457--1213Chr04:26192694..26192718 (25 bp)
AGTTCTCCAAAGATGGAATCCTATG
LOC_Os04g44630
OsAffx.26147.2.S1_x_at--247--5273Chr04:26192709..26192733 (25 bp)
GAATCCTATGCAGCCATGTTTTGAA
LOC_Os04g44630
OsAffx.26147.2.S1_x_at--773--5954Chr07:167144..167168 (25 bp)
GAGCAAGATTCCTGATAAGTACATA
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--998--9794Chr07:167200..167224 (25 bp)
TAACGGTGAGCATGCAACTTGCAAC
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--484--2494Chr07:167235..167259 (25 bp)
AACAGTTCTGTGCTAAGGTTCAATG
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--100--6993Chr07:167321..167345 (25 bp)
GTACCTGCTAGGAGAGATTGATAAT
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--659--3054Chr07:167343..167367 (25 bp)
AATCTGGATAGCAACCTTGACTTGA
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--171--5354Chr07:167469..167493 (25 bp)
GAAGATATTCAAGACCCTGACATAG
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--194--1394Chr07:167480..167504 (25 bp)
AGACCCTGACATAGCTAACACAAAG
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--44--7094Chr07:167591..167615 (25 bp)
GTCACACAATAGAAAATTGCCCGCT
LOC_Os07g01270
OsAffx.26147.2.S1_x_at--495--2233Chr07:167604..167628 (25 bp)
AAATTGCCCGCTGATGCGAATTGCA
LOC_Os07g01270
Target Sequence 
AGTTCTCCAAAGATGGAATCCTATGCAGCCATGTTTTGAAAGTGATGTTGTATCTGAAAATGAGCAAGATTCCTGATAAG
TACATAATTGAAAGATGGAGGAAAAAGGAGAGAAAATTAACGGTGAGCATGCAACTTGCAACAAATGATGAGAACAGTTC
TGTGCTAAGGTTCAATGTATTATCTAGAAGAATATGCAACATGNCATCAAAGGCATCAAAAAGTAAGGAAACATATGAGT
ACCTGCTAGGAGAGATTGATAATCTGGATAGCAACCTTGACTTGATAATTGAAGATGCAGCTCAAAATCAAGCANCAATT
GATGAAAGCAACACGGTGGAAAACACAAGTGAGGATNAAGCAGAAAAAGAAACAACAAATGAGCAAGAAGATATTCAAGA
CCCTGACATAGCTAACACAAAGGGGAAAAAATCANCAAGAACAAAAGGGATGGNANANNAGATAAAAGAACAGCCAAAAA
AACATTGTACAAGATGTGGAAGAACAAGTCACACAATAGAAAATTGCCCGCTGATGCGAATTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26147.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis