Browse Element(s) Details


OsAffx.13974.1.S1_at

Description tigr:9632.m02407
TID=OsAffx.13974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25650Os.27271.1.S1_a_at11/114+14838768..14840087expressed protein
LOC_Os04g25660NANA4+14844728..14847989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25670OsAffx.13974.1.S1_at11/114+14862328..14863421hypothetical protein
LOC_Os04g25670OsAffx.29642.1.S1_at1/114+14862328..14863421hypothetical protein
LOC_Os04g25680OsAffx.28220.1.S1_s_at8/114+14866544..14874150Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g25680Os.44572.1.S1_x_at7/114+14866544..14874150Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g25690OsAffx.26147.2.S1_x_at11/114+14874503..14875928transposon protein, putative, unclassified
LOC_Os04g25700Os.26886.6.S1_s_at9/114+14881274..14882507hypothetical protein
LOC_Os04g25700Os.26886.2.S1_s_at8/114+14881274..14882507hypothetical protein
LOC_Os04g25700OsAffx.16467.1.S1_at6/114+14881274..14882507hypothetical protein
LOC_Os04g25710NANA4+14882706..14884523transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25720OsAffx.26148.1.S1_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25720OsAffx.26148.1.S1_x_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25730Os.26886.3.S1_x_at6/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25730Os.26886.1.S1_x_at4/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13974.1.S1_at--231--8252Chr04:14862916..14862940 (25 bp)
GGCACTCACCATCGCTGGATAAGAA
LOC_Os04g25670
OsAffx.13974.1.S1_at--393--2172Chr04:14862980..14863004 (25 bp)
ACACTTGCCGCTGCTGGATAGGGAA
LOC_Os04g25670
OsAffx.13974.1.S1_at--944--8331Chr04:14863033..14863057 (25 bp)
TCAGGATAGGTAGCCCGGTCCGGTT
LOC_Os04g25670
OsAffx.13974.1.S1_at--1143--7231Chr04:14863050..14863074 (25 bp)
GTCCGGTTTTTTCCACTATCAGACG
LOC_Os04g25670
OsAffx.13974.1.S1_at--592--3632Chr04:14863081..14863105 (25 bp)
CTTGCTGCCGTTGGATAGGGAAAGA
LOC_Os04g25670
OsAffx.13974.1.S1_at--822--9251Chr04:14863141..14863165 (25 bp)
TCCTCATCAGCTTCCAACGAGACAA
LOC_Os04g25670
OsAffx.13974.1.S1_at--1085--3391Chr04:14863148..14863172 (25 bp)
CAGCTTCCAACGAGACAACGAGGTT
LOC_Os04g25670
OsAffx.13974.1.S1_at--285--3952Chr04:14863176..14863200 (25 bp)
CGGCACCGCTGGAGATGCTCGCCTT
LOC_Os04g25670
OsAffx.13974.1.S1_at--158--6171Chr04:14863254..14863278 (25 bp)
GAGGACCAGAACTGCCACCGGAGCC
LOC_Os04g25670
OsAffx.13974.1.S1_at--474--2211Chr04:14863288..14863312 (25 bp)
ACAACTGCCGCCATCCAGGGAGGGA
LOC_Os04g25670
OsAffx.13974.1.S1_at--738--6132Chr04:14863319..14863343 (25 bp)
GAGGGTGCTGTCTGGTGGATCTGGA
LOC_Os04g25670
Target Sequence 
GGCACTCACCATCGCTGGATAAGAAAAGAGAAAGGGGAGGGGAGGGGGGGACTATGGGATGGGGACACTTGCCGCTGCTG
GATAGGGAAAGAGAAGGGGGAGTGGGAGCGAGGCCGGTCAGGATAGGTAGCCCGGTCCGGTTTTTTCCACTATCAGACGG
GGGCACTTGCTGCCGTTGGATAGGGAAAGAGAAGGGGGAGGGGAGGGAGGCCGGTCAGGAGGGCCTCCTCATCAGCTTCC
AACGAGACAACGAGGTTGGGCGGCACCGCTGGAGATGCTCGCCTTCCGTCGCCGTCGCCGCCACACACAGCTGCTGGAGC
CGCCGCGTGCCGCCGCCCGAGGACCAGAACTGCCACCGGAGCCACCGCCGGAACAACTGCCGCCATCCAGGGAGGGAGGA
GGAGAGGGTGCTGTCTGGTGGATCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis