Browse Element(s) Details


Os.27271.1.S1_a_at

Description gb:AY576676.1
DB_XREF= gi:46399154
GEN=MBP
TID=Os.27271.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27271 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) membrane binding protein (MBP) mRNA, complete cds.
PROD=membrane binding protein
FL= gb:AY576676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2565011/11expressed protein
LOC_Os04g2506011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25600NANA4+14812125..14818279retrotransposon protein, putative, unclassified
LOC_Os04g25610Os.28943.1.S1_x_at1/114+14818914..14822103retrotransposon protein, putative, unclassified
LOC_Os04g25620NANA4+14823795..14825346transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25630NANA4+14827534..14828106transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25640Os.46306.1.S1_x_at2/114+14831215..14834310transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25650Os.27271.1.S1_a_at11/114+14838768..14840087expressed protein
LOC_Os04g25660NANA4+14844728..14847989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25670OsAffx.13974.1.S1_at11/114+14862328..14863421hypothetical protein
LOC_Os04g25670OsAffx.29642.1.S1_at1/114+14862328..14863421hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27271.1.S1_a_at--74--3732Chr04:14839281..14839305 (25 bp)
CTACCTGAGGTCTGAGCTGGGCGTC
LOC_Os04g25650
Os.27271.1.S1_a_at--36--3372Chr04:14839183..14839207 (25 bp)
CACCCGATGGAAGCTGCGGTAGCTA
LOC_Os04g25650
Os.27271.1.S1_a_at--783--4652Chr04:14839168..14839192 (25 bp)
GCGGTAGCTACAGCCTACAGTTCTA
LOC_Os04g25650
Os.27271.1.S1_a_at--902--4292Chr04:14839155..14839179 (25 bp)
CCTACAGTTCTACGCACCAAAATGG
LOC_Os04g25650
Os.27271.1.S1_a_at--724--8012Chr04:14839129..14839153 (25 bp)
GGAGGTGCACCCTACCTATGGCCGA
LOC_Os04g25650
Os.27271.1.S1_a_at--118--872Chr04:14839112..14839136 (25 bp)
ATGGCCGACAAAGTGCAAGCAAATC
LOC_Os04g25650
Os.27271.1.S1_a_at--300--5132Chr04:14839094..14839118 (25 bp)
GCAAATCTCTACACGTATACCTATA
LOC_Os04g25650
Os.27271.1.S1_a_at--772--2292Chr04:14839047..14839071 (25 bp)
AAATGTCCACGTTCACCCGAGAAAT
LOC_Os04g25650
Os.27271.1.S1_a_at--833--8092Chr04:14839006..14839030 (25 bp)
GGACATCGATCCAGTTAAAACCAAA
LOC_Os04g25650
Os.27271.1.S1_a_at--727--1572Chr04:14838945..14838969 (25 bp)
AGCTCTTCGCCAACTTCAGGTAGAG
LOC_Os04g25650
Os.27271.1.S1_a_at--721--4392Chr04:14838937..14838961 (25 bp)
GCCAACTTCAGGTAGAGGTTCACAA
LOC_Os04g25650
Target Sequence 
CTACCTGAGGTCTGAGCTGGGCGTCGGCCCGTTCTACACCGGAGCTCCCATGGTGGTGCTGCGGGCGGACAAGGTCTAGC
CAGCGNCGTCGCCATTGGCACCCGATGGAAGCTGCGGTAGCTACAGCCTACAGTTCTACGCACCAAAATGGTGGAGGTGC
ACCCTACCTATGGCCGACAAAGTGCAAGCAAATCTCTACACGTATACCTATACTATTATTAGGACATTCCGACAAAATGT
CCACGTTCACCCGAGAAATTTTAGTGAATAAATCTGGACATCGATCCAGTTAAAACCAAATTTACAACGGTTCAATAACT
AAAATAATNGANATGCAGCTCTTCGCCAACTTCAGGTAGAGGTTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27271.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis