Browse Element(s) Details


Os.44572.1.S1_x_at

Description gb:NM_186131.1
DB_XREF= gi:34899347
GEN=P0446F04.2
TID=Os.44572.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0446F04.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0446F04.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g718409/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g012708/11transposon protein, putative, unclassified
LOC_Os04g446407/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g256807/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_x_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_a_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.2.S1_x_at8/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71830Os.18664.2.S1_x_at4/111+41930154..41931501Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71840OsAffx.28220.1.S1_s_at10/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71840Os.44572.1.S1_x_at9/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71850OsAffx.26147.4.S1_s_at11/111+41948403..41953595transposon protein, putative, unclassified
LOC_Os01g71850OsAffx.26147.2.S1_x_at11/111+41948403..41953595transposon protein, putative, unclassified
LOC_Os01g71860Os.12952.1.S1_at11/111+41956151..41958545expressed protein
LOC_Os01g71860Os.1385.2.S1_x_at1/111+41956151..41958545expressed protein
LOC_Os01g71870NANA1+41959134..41959934transposon protein, putative, unclassified
LOC_Os01g71880NANA1+41968351..41969814transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44572.1.S1_x_at--1002--1333Chr07:170212..170236 (25 bp)
AGAGTCTTAGTTCCTTCTCGGAAAT
LOC_Os07g01270
Os.44572.1.S1_x_at--760--1294Chr07:170241..170265 (25 bp)
AGATCCTTATGTTCTTTCTGTTAGA
LOC_Os07g01270
Os.44572.1.S1_x_at--194--274Chr07:170311..170335 (25 bp)
ATATGCAAGTTGTCCGAGAGCTCTA
LOC_Os07g01270
Os.44572.1.S1_x_at--607--6393Chr07:170748..170772 (25 bp)
GATCGTTTCTTGGAGCAGCTAGTGC
LOC_Os07g01270
Os.44572.1.S1_x_at--245--5351NONE
GAAGTTGCACCTTTCTGACATGCTA
NONE
Os.44572.1.S1_x_at--927--8954Chr07:170791..170887 (25 bp)
TGACATGCTATTTTTCCCCATCGAA
LOC_Os07g01270
Os.44572.1.S1_x_at--327--5654Chr07:170927..170951 (25 bp)
GACAGAATGTTGGTCCTCTTAGATT
LOC_Os07g01270
Os.44572.1.S1_x_at--591--2894Chr07:170964..170988 (25 bp)
AAGGTGATCCCTATTTTGAAGACAT
LOC_Os07g01270
Os.44572.1.S1_x_at--352--9473Chr07:171111..171135 (25 bp)
TCTGGGATTCTTATGATGGCTCTTC
LOC_Os07g01270
Os.44572.1.S1_x_at--650--1351NONE
AGAGATCTTGCTTTGATTCTGGAAT
NONE
Os.44572.1.S1_x_at--769--8653Chr07:171895..171919 (25 bp)
TGTGGTCACCAAGGGTTGTTCTACC
NONE
Target Sequence 
AGAGTCTTAGTTCCTTCTCGGAAATTTTCAGATCCTTATGTTCTTTCTGTTAGACACCGATTTCCAGTGTCAGATCAAGA
AAAGAGACATTACAATGCAATATGCAAGTTGTCCGAGAGCTCTAAATGGCATAGTTATGATGCTGTAGACATTGATAATG
AACTATTATTAACTGATCTATCTTGTGCTGATTTGAGCAAGGTGAAAAGATCGTTTCTTGGAGCAGCTAGTGCTAGGAAG
TTGCACCTTTCTGACATGCTATTTTTCCCCATCGAACACCTTGAACATTGGTTCCTTTTTGTTGTTGATATAAAGGACAG
AATGTTGGTCCTCTTAGATTCTTTATATGAAAAAGGTGATCCCTATTTTGAAGACATTGAATGCTTATTGATCAATAATT
TACAGACATTCTGGGATTCTTATGATGGCTCTTCAATTGATTTTACTACTTTGAAGAAAGTTTACCCTTGTGTTCCAAAA
CAGAGATCTTGCTTTGATTCTGGAATTTTTGTTATGAAGTGTATGGAATTGTGGTCACCAAGGGTTGTTCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44572.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis