Browse Element(s) Details


Os.12952.1.S1_at

Description gb:AK063953.1
DB_XREF= gi:32973971
TID=Os.12952.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F10, full insert sequence.
FL= gb:AK063953.1 gb:AK102628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7186011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71830Os.18664.2.S1_x_at4/111+41930154..41931501Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71840OsAffx.28220.1.S1_s_at10/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71840Os.44572.1.S1_x_at9/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71850OsAffx.26147.4.S1_s_at11/111+41948403..41953595transposon protein, putative, unclassified
LOC_Os01g71850OsAffx.26147.2.S1_x_at11/111+41948403..41953595transposon protein, putative, unclassified
LOC_Os01g71860Os.12952.1.S1_at11/111+41956151..41958545expressed protein
LOC_Os01g71860Os.1385.2.S1_x_at1/111+41956151..41958545expressed protein
LOC_Os01g71870NANA1+41959134..41959934transposon protein, putative, unclassified
LOC_Os01g71880NANA1+41968351..41969814transposon protein, putative, unclassified
LOC_Os01g71890Os.35344.18.S1_x_at11/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890Os.35344.3.S1_x_at9/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890OsAffx.22940.5.S1_x_at4/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g71890OsAffx.22940.5.S1_at3/111+41977820..41986909transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0031225cellular_componentanchored to membrane
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12952.1.S1_at--1139--7611Chr01:41958042..41958066 (25 bp)
GGGACGACGGCAACGGGCTCACCTA
LOC_Os01g71860
Os.12952.1.S1_at--374--5811Chr01:41958080..41958104 (25 bp)
GACGCCATGGTGGACTGCATCTACG
LOC_Os01g71860
Os.12952.1.S1_at--745--4531Chr01:41958256..41958280 (25 bp)
GCCCGGACAGATGGAGGCGTACATA
LOC_Os01g71860
Os.12952.1.S1_at--665--2451Chr01:41958350..41958374 (25 bp)
AACAAGTCGCCGGTCTATCAGATTG
LOC_Os01g71860
Os.12952.1.S1_at--1033--7791Chr01:41958361..41958385 (25 bp)
GGTCTATCAGATTGCCTTTTCGAAT
LOC_Os01g71860
Os.12952.1.S1_at--311--4451Chr01:41958374..41958398 (25 bp)
GCCTTTTCGAATTAGCAGCTGCCAA
LOC_Os01g71860
Os.12952.1.S1_at--287--9851Chr01:41958401..41958425 (25 bp)
TAAATGAGTTACAGCCTTACAGGTG
LOC_Os01g71860
Os.12952.1.S1_at--793--3371Chr01:41958412..41958436 (25 bp)
CAGCCTTACAGGTGATCGATCGAGT
LOC_Os01g71860
Os.12952.1.S1_at--820--6391Chr01:41958425..41958449 (25 bp)
GATCGATCGAGTAATGCTTCATTAA
LOC_Os01g71860
Os.12952.1.S1_at--137--4911Chr01:41958440..41958464 (25 bp)
GCTTCATTAAATGTTGGGCGTATTT
LOC_Os01g71860
Os.12952.1.S1_at--785--7571Chr01:41958455..41958479 (25 bp)
GGGCGTATTTTAATGTTCTCAGTAT
LOC_Os01g71860
Target Sequence 
GGGACGACGGCAACGGGCTCACCTACACCAACCTGTTCGACGCCATGGTGGACTGCATCTACGCCGCGCTGGAGAAGGCC
GACGCCGGGAACGTGAGGGTGGTGGTGTCGGAGAGCGGGTGGCCGTNCGGCGGAAGGGNATCGGGGCGAGCATGGACAAC
GCGAGGGCGTACAACCAGGGGCTGATCGACCATGTCGGGCGTGGCACGCCCAAGAGGCCCGGACAGATGGAGGCGTACAT
ATTTNCCATGTTCAACGAGAACCAGAAGACAGGGGCTGCCACCGAGAGGCATTTTGGCCTCTTCTACCCTAACAAGTCGC
CGGTCTATCAGATTGCCTTTTCGAATTAGCAGCTGCCAATATAAATGAGTTACAGCCTTACAGGTGATCGATCGAGTAAT
GCTTCATTAAATGTTGGGCGTATTTTAATGTTCTCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis