Browse Element(s) Details


OsAffx.24244.1.S1_at

Description tigr:9630.m01320
TID=OsAffx.24244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1421011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14170Os.10428.1.S1_at11/112+7760923..7762488Peroxidase precursor, putative, expressed
LOC_Os02g14180NANA2+7770037..7771053Peroxidase family protein
LOC_Os02g14190Os.53584.1.S1_at11/112+7772398..7776160Spermine/spermidine synthase family protein, expressed
LOC_Os02g14210OsAffx.24244.1.S1_at11/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210Os.50043.1.A1_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210OsAffx.22711.4.A1_x_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.5.S1_x_at3/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.3.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.20729.1.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14230OsAffx.12031.1.S1_at9/112+7796193..7798258hypothetical protein
LOC_Os02g14240OsAffx.2606.1.S1_at11/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_at2/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.1436.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_x_at1/112+7807964..7808868hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24244.1.S1_at--879--391Chr02:7782196..7782220 (25 bp)
ATCATGGGCTCATCAGTACTCATTG
LOC_Os02g14210
OsAffx.24244.1.S1_at--1003--791Chr02:7782199..7782223 (25 bp)
ATGGGCTCATCAGTACTCATTGTGC
LOC_Os02g14210
OsAffx.24244.1.S1_at--151--411Chr02:7782207..7782231 (25 bp)
ATCAGTACTCATTGTGCCCTGCCTG
LOC_Os02g14210
OsAffx.24244.1.S1_at--625--9171Chr02:7782221..7782720 (25 bp)
TGCCCTGCCTGTCAGCAATTGGGAA
LOC_Os02g14210
OsAffx.24244.1.S1_at--1112--4271Chr02:7782224..7782723 (25 bp)
CCTGCCTGTCAGCAATTGGGAAGAA
LOC_Os02g14210
OsAffx.24244.1.S1_at--322--5311Chr02:7782721..7782745 (25 bp)
GAAGGTGCAGCATATATGCAAGAGT
LOC_Os02g14210
OsAffx.24244.1.S1_at--27--6911Chr02:7782744..7782768 (25 bp)
GTATGCATACTTTCAGTTTTGCGCA
LOC_Os02g14210
OsAffx.24244.1.S1_at--220--331Chr02:7782750..7782774 (25 bp)
ATACTTTCAGTTTTGCGCATGCACG
LOC_Os02g14210
OsAffx.24244.1.S1_at--457--10271Chr02:7782761..7783057 (25 bp)
TTTGCGCATGCACGCCCGAATGGAA
LOC_Os02g14210
OsAffx.24244.1.S1_at--742--651Chr02:7782768..7783064 (25 bp)
ATGCACGCCCGAATGGAATTGAGTT
LOC_Os02g14210
OsAffx.24244.1.S1_at--1130--8191Chr02:7783054..7783078 (25 bp)
GGAATTGAGTTGATCCGTCACCACC
LOC_Os02g14210
Target Sequence 
ATCATGGGCTCATCAGTACTCATTGTGCCCTGCCTGTCAGCAATTGGGAAGAAGGTGCAGCATATATGCAAGAGTATGCA
TACTTTCAGTTTTGCGCATGCACGCCCGAATGGAATTGAGTTGATCCGTCACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis