Browse Element(s) Details


OsAffx.12031.1.S1_at

Description tigr:9630.m01323
TID=OsAffx.12031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g142309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14190Os.53584.1.S1_at11/112+7772398..7776160Spermine/spermidine synthase family protein, expressed
LOC_Os02g14210OsAffx.24244.1.S1_at11/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210Os.50043.1.A1_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210OsAffx.22711.4.A1_x_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.5.S1_x_at3/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.3.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.20729.1.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14230OsAffx.12031.1.S1_at9/112+7796193..7798258hypothetical protein
LOC_Os02g14240OsAffx.2606.1.S1_at11/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_at2/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.1436.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14250OsAffx.30613.1.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14260Os.46012.2.S1_x_at2/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.46012.3.S1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.27088.1.A1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12031.1.S1_at--925--4993Chr02:33627850..33627874 (25 bp)
GCAGGCGTGCTCACCGGCCGAGGTC
NONE
OsAffx.12031.1.S1_at--291--3791Chr02:7798162..7798186 (25 bp)
CTCGTTCTCGACATGAACTCGAGGG
LOC_Os02g14230
OsAffx.12031.1.S1_at--955--7951Chr02:7798137..7798161 (25 bp)
GGATCAACGTCGAGGCAGCGGAAGA
LOC_Os02g14230
OsAffx.12031.1.S1_at--167--1491Chr02:7798105..7798129 (25 bp)
AGCAAGCGTCCGTGGGTAGTGGTCG
LOC_Os02g14230
OsAffx.12031.1.S1_at--870--1913Chr02:33628125..33628178 (25 bp)
ACGGGCGGGTAGGATGCTCTCCCTC
NONE
OsAffx.12031.1.S1_at--1048--1071Chr02:7797937..7797961 (25 bp)
AGTGGAAGGGCGGACGCGACCACGC
LOC_Os02g14230
OsAffx.12031.1.S1_at--399--4611Chr02:7797922..7797946 (25 bp)
GCGACCACGCCAAGGACGCTGTGCG
LOC_Os02g14230
OsAffx.12031.1.S1_at--859--1811Chr02:7797916..7797940 (25 bp)
ACGCCAAGGACGCTGTGCGCACCTT
LOC_Os02g14230
OsAffx.12031.1.S1_at--595--3891Chr02:7797904..7797928 (25 bp)
CTGTGCGCACCTTCGACGCGAGAGG
LOC_Os02g14230
OsAffx.12031.1.S1_at--26--1331NONE
AGAGGAGCGGCGATTATTGCTAGTC
NONE
OsAffx.12031.1.S1_at--424--971NONE
AGGAGCGGCGATTATTGCTAGTCAA
NONE
Target Sequence 
GCAGGCGTGCTCACCGGCCGAGGTCGCCGCCCGCCTCGCTCCCTCGTTCTCGACATGAACTCGAGGGGGATCAACGTCGA
GGCAGCGGAAGAGGGGCGGAGCAAGCGTCCGTGGGTAGTGGTCGGCGAGGACGGGCGGGTAGGATGCTCTCCCTCGTCCT
CGCGGCGGAGCGGCGGCGGCGGCAGGCCGCGGGCAGAGTGGAAGGGCGGACGCGACCACGCCAAGGACGCTGTGCGCACC
TTCGACGCGAGAGGAGCGGCGATTATTGCTAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis