Browse Element(s) Details


Os.53929.1.S1_at

Description gb:AK100884.1
DB_XREF= gi:32986093
TID=Os.53929.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127O13, full insert sequence.
FL= gb:AK100884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2666011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26610NANA5+15383883..15384497hypothetical protein
LOC_Os05g26620Os.8502.7.S1_x_at8/115+15386427..15386879Prolamin PPROL 14 precursor, putative
LOC_Os05g26620Os.8502.5.S1_x_at6/115+15386427..15386879Prolamin PPROL 14 precursor, putative
LOC_Os05g26620Os.8502.4.S1_at2/115+15386427..15386879Prolamin PPROL 14 precursor, putative
LOC_Os05g26630Os.51571.1.S1_x_at6/115+15391672..15393502expressed protein
LOC_Os05g26640NANA5+15397547..15399409hypothetical protein
LOC_Os05g26649OsAffx.2606.1.S1_at1/115+15400130..15400822NA
LOC_Os05g26649OsAffx.8939.1.S1_x_at1/115+15400130..15400822NA
LOC_Os05g26660Os.53929.1.S1_at11/115+15404241..15410018EF hand family protein, expressed
LOC_Os05g26670OsAffx.27028.1.S1_at11/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.2.S1_at2/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.3.S1_s_at1/115+15413502..15414040hypothetical protein
LOC_Os05g26680NANA5+15416574..15418571retrotransposon protein, putative, unclassified
LOC_Os05g26690Os.8502.5.S1_x_at7/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.7.S1_x_at6/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.38512.1.S1_x_at4/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.4.S1_at1/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26700OsAffx.27027.1.S1_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26700OsAffx.27027.1.S1_x_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26710OsAffx.16205.1.S1_at2/115+15431644..15433890hypothetical protein
LOC_Os05g26720Os.38512.1.S1_x_at6/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.5.S1_x_at4/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.7.S1_x_at3/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0015036molecular_functiondisulfide oxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53929.1.S1_at--1148--5431Chr05:15405208..15405232 (25 bp)
GAACCCTGAAGGTCCGTTGAGGATC
LOC_Os05g26660
Os.53929.1.S1_at--825--931Chr05:15405181..15405205 (25 bp)
AGGCACAGGGCGTCATCGGTTCAAA
LOC_Os05g26660
Os.53929.1.S1_at--923--1011Chr05:15404837..15404861 (25 bp)
AGGTACAGGCACCTTGGCCAGTTTG
LOC_Os05g26660
Os.53929.1.S1_at--407--2411Chr05:15404794..15404818 (25 bp)
AAACAGCCGCTCAATTGCCGGGTGA
LOC_Os05g26660
Os.53929.1.S1_at--38--7951Chr05:15404767..15404791 (25 bp)
GGATACATGTTGGTCACAGCACCCA
LOC_Os05g26660
Os.53929.1.S1_at--502--5091Chr05:15404749..15404773 (25 bp)
GCACCCAATGGCTATGGTATTCTGT
LOC_Os05g26660
Os.53929.1.S1_at--54--7071Chr05:15404597..15404621 (25 bp)
GTAAGCAATTCAGCTGGCGCACCAG
LOC_Os05g26660
Os.53929.1.S1_at--469--4951Chr05:15404477..15404501 (25 bp)
GCATTTTGCCAACTGAAGCTCTATT
LOC_Os05g26660
Os.53929.1.S1_at--993--6711Chr05:15404358..15404382 (25 bp)
GTTCGGCTATTTTCACAAGCTCAGG
LOC_Os05g26660
Os.53929.1.S1_at--1019--7091Chr05:15404310..15404334 (25 bp)
GTCACCAATTTTTGATCTTGCCGAT
LOC_Os05g26660
Os.53929.1.S1_at--259--6431Chr05:15404297..15404321 (25 bp)
GATCTTGCCGATATTTCTATGACAC
LOC_Os05g26660
Target Sequence 
GAACCCTGAAGGTCCGTTGAGGATCAGAGGCACAGGGCGTCATCGGTTCAAACCTTTCAGGTACAGGCACCTTGGCCAGT
TTGCTCCACTGGGTGGAGAGCAAACAGCCGCTCAATTGCCGGGTGATTGGATACATGTTGGTCACAGCACCCAATGGCTA
TGGTATTCTGTCTATGCCAGTAAGCAATTCAGCTGGCGCACCAGGATGCTGGTAGTATCTGATTGGGGCAGGCGGTTCAT
CTATGGAAGGGACTCAAGCAGCCTATAAATTGAACTAGGNATGGTGTTGTTCACCGCCCTGCATTTTGCCAACTGAAGCT
CTATTANACTTGGATAATACAATTTTTGCATACCTTCGGAAACAACTATTTTTGCATACAGCATCATTTTTTTTANANAN
ANANANCATCGTTATATTTGTTCGGCTATTTTCACAAGCTCAGGTTTCTGTAGCGTANCAAGGTTTTGTCACCAATTTTT
GATCTTGCCGATATTTCTATGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis